View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12976_high_4 (Length: 399)
Name: NF12976_high_4
Description: NF12976
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12976_high_4 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 159; Significance: 1e-84; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 11 - 177
Target Start/End: Complemental strand, 21180074 - 21179908
Alignment:
| Q |
11 |
agaatatgctatggaaggcgtttactcgattaaatctgacgtgtttagctttggagtccttttgttagagattataagcggaaagaagaatactggtttt |
110 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21180074 |
agaatatgctatggaaggcgtttattcgattaaatctgacgtgtttagctttggagtccttttgttagagattataagcggaaagaagaatactggtttt |
21179975 |
T |
|
| Q |
111 |
tatcaaacaaattccttcaatcttcttggatatgtaagttcctaatttcaactcaacttatcttaat |
177 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
21179974 |
tatcaaacaaattccttcaatcttcttggatatgtaagttcctaaattcaactcaacttatcttaat |
21179908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 156; E-Value: 9e-83
Query Start/End: Original strand, 225 - 380
Target Start/End: Complemental strand, 21179838 - 21179683
Alignment:
| Q |
225 |
tattcaaggcttgggatctatggaccaacaattctggaatggacttgattgattcaaaactggatgatatctccaacaagcatttagtaccaaaatacgt |
324 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21179838 |
tattcaaggcttgggatctatggaccaacaattctggaatggacttgattgattcaaaactggatgatatctccaacaagcatttagtaccaaaatacgt |
21179739 |
T |
|
| Q |
325 |
gaatattggacttctatgtgttcaacaaagtccagaagatagaccaaccatgtctg |
380 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21179738 |
gaatattggacttctatgtgttcaacaaagtccagaagatagaccaaccatgtctg |
21179683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 198 - 380
Target Start/End: Original strand, 23190162 - 23190344
Alignment:
| Q |
198 |
ataattttgggttctttacttgctgaatattcaaggcttgggatctatggaccaacaattctggaatggacttgattgattcaaaactggatgatatctc |
297 |
Q |
| |
|
|||||||||||||||||||||| |||||| |||||||||||||||| |||| ||| ||||||||||||| | ||||| ||| || ||||||||||||| |
|
|
| T |
23190162 |
ataattttgggttctttacttgttgaatactcaaggcttgggatctttggaacaatgattctggaatggagctaattgactcagaattggatgatatctc |
23190261 |
T |
|
| Q |
298 |
caacaagcatttagtaccaaaatacgtgaatattggacttctatgtgttcaacaaagtccagaagatagaccaaccatgtctg |
380 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| |||||||| ||||||||||||||||| |||||||| ||||||||||||| |
|
|
| T |
23190262 |
caacaagcatttagtaccaagatacgtgaatatcggacttctctgtgttcaacaaagtccggaagataggccaaccatgtctg |
23190344 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 198 - 380
Target Start/End: Original strand, 23182786 - 23182968
Alignment:
| Q |
198 |
ataattttgggttctttacttgctgaatattcaaggcttgggatctatggaccaacaattctggaatggacttgattgattcaaaactggatgatatctc |
297 |
Q |
| |
|
|||||||||||||||||||||| ||| || |||||||||||||||| ||||||||| ||||||||||||| | ||||||||| || |||||||||| || |
|
|
| T |
23182786 |
ataattttgggttctttacttgttgattactcaaggcttgggatctttggaccaacgattctggaatggagctaattgattcagaattggatgatatatc |
23182885 |
T |
|
| Q |
298 |
caacaagcatttagtaccaaaatacgtgaatattggacttctatgtgttcaacaaagtccagaagatagaccaaccatgtctg |
380 |
Q |
| |
|
||||||||||||||||| || |||||||||||| |||||||| ||||||||||||||||| || ||||| ||||||||||||| |
|
|
| T |
23182886 |
caacaagcatttagtactaagatacgtgaatatcggacttctctgtgttcaacaaagtccggatgataggccaaccatgtctg |
23182968 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 12 - 160
Target Start/End: Original strand, 23182527 - 23182675
Alignment:
| Q |
12 |
gaatatgctatggaaggcgtttactcgattaaatctgacgtgtttagctttggagtccttttgttagagattataagcggaaagaagaatactggttttt |
111 |
Q |
| |
|
|||||||||||||||||| ||| ||| ||||||| ||||| || ||||||||||| |||||||||||||||||||| || ||||||||||||||||||| |
|
|
| T |
23182527 |
gaatatgctatggaaggccttttctcagttaaatccgacgtcttcagctttggagtgcttttgttagagattataagtggcaagaagaatactggttttt |
23182626 |
T |
|
| Q |
112 |
atcaaacaaattccttcaatcttcttggatatgtaagttcctaatttca |
160 |
Q |
| |
|
||||||||| || |||||||||||||||||||||||| ||||| |||| |
|
|
| T |
23182627 |
atcaaacaagctctttcaatcttcttggatatgtaagtacctaaattca |
23182675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 12 - 160
Target Start/End: Original strand, 23189904 - 23190052
Alignment:
| Q |
12 |
gaatatgctatggaaggcgtttactcgattaaatctgacgtgtttagctttggagtccttttgttagagattataagcggaaagaagaatactggttttt |
111 |
Q |
| |
|
|||||||||||||||||| ||| ||| ||||||| ||||| |||||||||||||| ||| |||||||||||||||| || ||||||||||||||||||| |
|
|
| T |
23189904 |
gaatatgctatggaaggccttttctcagttaaatccgacgtctttagctttggagttcttctgttagagattataagtggcaagaagaatactggttttt |
23190003 |
T |
|
| Q |
112 |
atcaaacaaattccttcaatcttcttggatatgtaagttcctaatttca |
160 |
Q |
| |
|
||||||||| || |||||||||||||||||||||||| ||||| |||| |
|
|
| T |
23190004 |
atcaaacaagctctttcaatcttcttggatatgtaagtacctaaattca |
23190052 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University