View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12976_high_5 (Length: 355)
Name: NF12976_high_5
Description: NF12976
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12976_high_5 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 1 - 355
Target Start/End: Original strand, 14812299 - 14812653
Alignment:
| Q |
1 |
aagatgatgatgagtttacatttgttttcgcagatcctaaaggttcaccgatttccgctgacgatgtgttcgataaaggtcagattcgtccgannnnnnn |
100 |
Q |
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| T |
14812299 |
aagatgatgatgagtttacatttgttttcgcagatcctaaaggttcaccgatttccgctgacgatgtgttcgataaaggtcagattcgtccgatttttcc |
14812398 |
T |
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| Q |
101 |
nnnnnncggtcaggatcttcatttcaccgacgattacgataatgaatctggaaaccgttcaccggtgaggaaatttttcgtcgaatcaccgtcttcgtcg |
200 |
Q |
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| T |
14812399 |
ttttttcggtcaggatcttcatttcaccgacgattacgataatgaatctggaaaccgttcaccggtgaggaaatttttcgtggaatcaccgtcttcgtcg |
14812498 |
T |
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| Q |
201 |
aagacagcgacgagttctgcggcggtggaaggaacttactgcgagtggaatccnnnnnnngcggtgaagagtaattcaacaggatcatcaaaactatgga |
300 |
Q |
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| T |
14812499 |
aagacagcgacgagttctgcggcggtggaaggaacttactgcgagtggaatccaaaaaaagcggtgaagagtaattcaacaggatcatcaaaactatgga |
14812598 |
T |
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| Q |
301 |
agttacgagatccaaagctgagaagtaacagtgacggaaaagacgcttttgtgtt |
355 |
Q |
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| T |
14812599 |
agttacgagatccaaagctgagaagtaacagtgacggaaaagacgctttcgtgtt |
14812653 |
T |
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