View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12976_low_10 (Length: 320)
Name: NF12976_low_10
Description: NF12976
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12976_low_10 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 288; Significance: 1e-161; HSPs: 9)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 19 - 310
Target Start/End: Original strand, 15301618 - 15301909
Alignment:
| Q |
19 |
atttgacccttcaaattgttgaacgagagatttaatacctcaagaaaagaaagagacgacatggtttgaggaatttctcctgaaagtgtgttgtttgaca |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15301618 |
atttgacccttcaaattgttgaacgagagatttaatacctcaagaaaagaaagagacgacatggtttgaggaatttctcctgaaagtgtgttgtttgaca |
15301717 |
T |
|
| Q |
119 |
gatcaagggactctaactgtttcatgttgccaatatcatttggtatggttcccatgaattgattttgtgacaagttcatggattgtaatgcagtgagtct |
218 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15301718 |
gatcaagggactctaactgtttcatgtttccaatatcatttggtatggttcccatgaattgattttgtgacaagttcatggattgtaatgcagtgagtct |
15301817 |
T |
|
| Q |
219 |
aaatactcctgaaggtattctacccgacaattggttattggaaaggccaatgatatgtatatactttttataggataagtggttgccctttg |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15301818 |
aaatactcctgaaggtattctacccgacaattggttattggaaaggccaatgatatgtatatactttttataggataagtggttgccctttg |
15301909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 19 - 310
Target Start/End: Original strand, 15481987 - 15482278
Alignment:
| Q |
19 |
atttgacccttcaaattgttgaacgagagatttaatacctcaagaaaagaaagagacgacatggtttgaggaatttctcctgaaagtgtgttgtttgaca |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15481987 |
atttgacccttcaaattgttgaacgagagatttaatacctcaagaaaagaaagagacgacatggtttgaggaatttctcctgaaagtgtgttgtttgaca |
15482086 |
T |
|
| Q |
119 |
gatcaagggactctaactgtttcatgttgccaatatcatttggtatggttcccatgaattgattttgtgacaagttcatggattgtaatgcagtgagtct |
218 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15482087 |
gatcaagggactctaactgtttcatgtttccaatatcatttggtatggttcccatgaattgattttgtgacaagttcatggattgtaatgcagtgagtct |
15482186 |
T |
|
| Q |
219 |
aaatactcctgaaggtattctacccgacaattggttattggaaaggccaatgatatgtatatactttttataggataagtggttgccctttg |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15482187 |
aaatactcctgaaggtattctacccgacaattggttattggaaaggccaatgatatgtatatactttttataggataagtggttgccctttg |
15482278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 19 - 310
Target Start/End: Original strand, 15445366 - 15445656
Alignment:
| Q |
19 |
atttgacccttcaaattgttgaacgagagatttaatacctcaagaaaagaaagagacgacatggtttgaggaatttctcctgaaagtgtgttgtttgaca |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15445366 |
atttgacccttcaaattgttgaacgagagatttaatacctcaagaaaagaaagagacaacatggtttgaggaatttctcctgaaagtgtgttgtttgaca |
15445465 |
T |
|
| Q |
119 |
gatcaagggactctaactgtttcatgttgccaatatcatttggtatggttcccatgaattgattttgtgacaagttcatggattgtaatgcagtgagtct |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| || ||||||||||||||||| |||||||||||| ||||||||| ||||| |||||||||||||| |
|
|
| T |
15445466 |
gatcaagggactctaactgtttcatgttgccaatttcttttggtatggttcccattaattgattttgt-acaagttcaaggatttcaatgcagtgagtct |
15445564 |
T |
|
| Q |
219 |
aaatactcctgaaggtattctacccgacaattggttattggaaaggccaatgatatgtatatactttttataggataagtggttgccctttg |
310 |
Q |
| |
|
||||||| ||||||||||||||||||| || ||||| || |||||| |||| | ||| |||||||| | |||| ||||| |||||| |||| |
|
|
| T |
15445565 |
aaatacttctgaaggtattctacccgaaaaatggttgttagaaaggtcaataacatgcatatacttataatagtctaagtcgttgccttttg |
15445656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 19 - 312
Target Start/End: Original strand, 15283109 - 15283402
Alignment:
| Q |
19 |
atttgacccttcaaattgttgaacgagagatttaatacctcaagaaaagaaagagacgacatggtttgaggaatttctcctgaaagtgtgttgtttgaca |
118 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||| | || ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15283109 |
atttgacccttcaaattgttgaacgagaggtttaatacctcaagaaaagttatagcagacatggtttgaggaatttctcctgaaagtgtgttgtttgaca |
15283208 |
T |
|
| Q |
119 |
gatcaagggactctaactgtttcatgttgccaatatcatttggtatggttcccatgaattgattttgtgacaagttcatggattgtaatgcagtgagtct |
218 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| || ||||||||||||||||| |||||||||||||||||||| | ||||| |||||||||||||| |
|
|
| T |
15283209 |
aatcaagggactctaattgtttcatgttgccaatttcttttggtatggttcccattaattgattttgtgacaagtttaaggatttcaatgcagtgagtct |
15283308 |
T |
|
| Q |
219 |
aaatactcctgaaggtattctacccgacaattggttattggaaaggccaatgatatgtatatactttttataggataagtggttgccctttgct |
312 |
Q |
| |
|
||||||| || |||||||||||| ||||||||||| || |||||| ||| || ||| |||||||| | ||||| ||||| ||| || |||||| |
|
|
| T |
15283309 |
aaatacttctataggtattctacctgacaattggttgttagaaaggtcaacgacatgcatatacttgtcataggttaagtcgtttccttttgct |
15283402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 19 - 312
Target Start/End: Original strand, 15463478 - 15463771
Alignment:
| Q |
19 |
atttgacccttcaaattgttgaacgagagatttaatacctcaagaaaagaaagagacgacatggtttgaggaatttctcctgaaagtgtgttgtttgaca |
118 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||| | || ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15463478 |
atttgacccttcaaattgttgaacgagaggtttaatacctcaagaaaagttatagcagacatggtttgaggaatttctcctgaaagtgtgttgtttgaca |
15463577 |
T |
|
| Q |
119 |
gatcaagggactctaactgtttcatgttgccaatatcatttggtatggttcccatgaattgattttgtgacaagttcatggattgtaatgcagtgagtct |
218 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| || ||||||||||||||||| |||||||||||||||||||| | ||||| |||||||||||||| |
|
|
| T |
15463578 |
aatcaagggactctaattgtttcatgttgccaatttcttttggtatggttcccattaattgattttgtgacaagtttaaggatttcaatgcagtgagtct |
15463677 |
T |
|
| Q |
219 |
aaatactcctgaaggtattctacccgacaattggttattggaaaggccaatgatatgtatatactttttataggataagtggttgccctttgct |
312 |
Q |
| |
|
||||||| || |||||||||||| ||||||||||| || |||||| ||| || ||| |||||||| | ||||| ||||| ||| || |||||| |
|
|
| T |
15463678 |
aaatacttctataggtattctacctgacaattggttgttagaaaggtcaacgacatgcatatacttgtcataggttaagtcgtttccttttgct |
15463771 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 19 - 248
Target Start/End: Original strand, 15312483 - 15312712
Alignment:
| Q |
19 |
atttgacccttcaaattgttgaacgagagatttaatacctcaagaaaagaaagagacgacatggtttgaggaatttctcctgaaagtgtgttgtttgaca |
118 |
Q |
| |
|
|||||||| || ||||||||||| |||||||| ||||||||||||||||| |||| ||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
15312483 |
atttgaccttttaaattgttgaatgagagattcaatacctcaagaaaagatagagcagacatggtttgaggaatttctcctgaaagtgagttgtttgaca |
15312582 |
T |
|
| Q |
119 |
gatcaagggactctaactgtttcatgttgccaatatcatttggtatggttcccatgaattgattttgtgacaagttcatggattgtaatgcagtgagtct |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
15312583 |
gatcaagggactctaactgtttcatgttgccaatttcatttggtatggttcccatgaattgattttgtgacaagttcaaggattgtaatgcagtgagtct |
15312682 |
T |
|
| Q |
219 |
aaatactcctgaaggtattctacccgacaa |
248 |
Q |
| |
|
|||| | || |||| ||||| || ||||| |
|
|
| T |
15312683 |
gaatatttctaaaggaattctgccggacaa |
15312712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 19 - 248
Target Start/End: Original strand, 15492852 - 15493081
Alignment:
| Q |
19 |
atttgacccttcaaattgttgaacgagagatttaatacctcaagaaaagaaagagacgacatggtttgaggaatttctcctgaaagtgtgttgtttgaca |
118 |
Q |
| |
|
|||||||| || ||||||||||| |||||||| ||||||||||||||||| |||| ||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
15492852 |
atttgaccttttaaattgttgaatgagagattcaatacctcaagaaaagatagagcagacatggtttgaggaatttctcctgaaagtgagttgtttgaca |
15492951 |
T |
|
| Q |
119 |
gatcaagggactctaactgtttcatgttgccaatatcatttggtatggttcccatgaattgattttgtgacaagttcatggattgtaatgcagtgagtct |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
15492952 |
gatcaagggactctaactgtttcatgttgccaatttcatttggtatggttcccatgaattgattttgtgacaagttcaaggattgtaatgcagtgagtct |
15493051 |
T |
|
| Q |
219 |
aaatactcctgaaggtattctacccgacaa |
248 |
Q |
| |
|
|||| | || |||| ||||| || ||||| |
|
|
| T |
15493052 |
gaatatttctaaaggaattctgccggacaa |
15493081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 19 - 172
Target Start/End: Complemental strand, 15114178 - 15114025
Alignment:
| Q |
19 |
atttgacccttcaaattgttgaacgagagatttaatacctcaagaaaagaaagagacgacatggtttgaggaatttctcctgaaagtgtgttgtttgaca |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
15114178 |
atttgacccttcaaattgttgaacgagagattcaatacctcaagaaaagaaagagacgacatggtttgaggaatttctcctgaaagtgtgttgtttgaga |
15114079 |
T |
|
| Q |
119 |
gatcaagggactctaactgtttcatgttgccaatatcatttggtatggttccca |
172 |
Q |
| |
|
||||||||||||||||||||||||||||||||| || |||||||||||||||| |
|
|
| T |
15114078 |
aatcaagggactctaactgtttcatgttgccaatttcttttggtatggttccca |
15114025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 19 - 208
Target Start/End: Original strand, 18051113 - 18051302
Alignment:
| Q |
19 |
atttgacccttcaaattgttgaacgagagatttaatacctcaagaaaagaaagagacgacatggtttgaggaatttctcctgaaagtgtgttgtttgaca |
118 |
Q |
| |
|
|||||||||| |||||||||||| |||||||| ||| ||||||| |||| | || |||||| ||| |||||||||||| ||||||||||| || || | |
|
|
| T |
18051113 |
atttgaccctccaaattgttgaatgagagattcaatgcctcaaggaaagttaaagcagacatgcttttaggaatttctccagaaagtgtgttattcgaga |
18051212 |
T |
|
| Q |
119 |
gatcaagggactctaactgtttcatgttgccaatatcatttggtatggttcccatgaattgattttgtgacaagttcatggattgtaatg |
208 |
Q |
| |
|
|| |||||| || || ||||||||||||||||| || ||||||||||||||||| |||||||| || ||||| || | |||||| |||| |
|
|
| T |
18051213 |
aattaagggattccaattgtttcatgttgccaatttcttttggtatggttcccattaattgattatgcgacaaatttaaggattgcaatg |
18051302 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University