View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12976_low_11 (Length: 290)
Name: NF12976_low_11
Description: NF12976
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12976_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 19 - 287
Target Start/End: Original strand, 55215110 - 55215390
Alignment:
| Q |
19 |
caagacttattactcccattggttagtaatcaattcttccatttctc--------catacttttccttcctattttgcacannnnnnnnnnnnn----at |
106 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| || |
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| T |
55215110 |
caagacttattactcccattggttagtaatcaattcttccatttctcaatatctccatacttttccttcctattttgcacattttattttttatttttat |
55215209 |
T |
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| Q |
107 |
gcaggtttgtagcagcaatattgttagcaattcactccggattgttgtatggtctacatgttccagattggcagttcgatgcatcactctctacctcttc |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55215210 |
gcaggtttgtagcagcaatattgttagcaattcactccggattgttgtatggtctacatgttccagattggcagttcgatgcatcactctctacctcttc |
55215309 |
T |
|
| Q |
207 |
tttgcctccaattcaagccggcaatgtttacacagtgagaataggcttcactccccacttaccttatttattctgtgctgc |
287 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
55215310 |
tttgcctccaattcaagccggcaatgtttacacagtgagaataggcttcactccccacttaccttatttattttgtgctgc |
55215390 |
T |
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