View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12976_low_12 (Length: 282)
Name: NF12976_low_12
Description: NF12976
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12976_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 161; Significance: 6e-86; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 11 - 187
Target Start/End: Complemental strand, 4662081 - 4661905
Alignment:
| Q |
11 |
cagagactgacaaagaaaacaattaatatgggaaaaactgaaacattcacactgcacaagcataaccaagtttcatactatgcttgtcataatactttga |
110 |
Q |
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| T |
4662081 |
cagacactgacaaagaaaacaattaatatgggaaaaactgaaacattcacactgcacaagcataaccaagtttcatgttatgcttgtcataatactttga |
4661982 |
T |
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| Q |
111 |
aactagaactatatgtaaatataatgctgactgatacagtttaaacagtctttgattgtttcaccttccacttaaac |
187 |
Q |
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| T |
4661981 |
aactagaactatatataaatataatgctgactgatacagtttaaacagtctttgattgtttcaccttccacttaaac |
4661905 |
T |
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Target: chr1; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 208 - 264
Target Start/End: Complemental strand, 4661869 - 4661813
Alignment:
| Q |
208 |
aagtggtcataatattgaagataagtccgaccaccacgccgacattggtgtcgatgt |
264 |
Q |
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| T |
4661869 |
aagtggtcataatattgaagataagtccgaccaccacgccgacattggtgtcgatgt |
4661813 |
T |
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