View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12976_low_13 (Length: 252)
Name: NF12976_low_13
Description: NF12976
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12976_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 2908120 - 2907888
Alignment:
| Q |
1 |
acattcaagaagcccccatgatagaaaacctcaactcaataaattctagcaaccgaagactgaggttgatcaataaatttccatgcttgcttatccaaca |
100 |
Q |
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| T |
2908120 |
acattcaagaagcccccatgatagaaaacctcaactcaataaattctagcaaccgaagactgaggttgatcaataaatttccatgcttgcttatccaaca |
2908021 |
T |
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| Q |
101 |
tagcgaggttgaaagcataaatacagaagccggccgggatctttaaacttcttaggcacaataagcttaacccaactcaatcatttataatacatttgga |
200 |
Q |
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| T |
2908020 |
tagcgaggttgaaagcataaatacggaa----gtcgggatctttaaacttcttaggcacaataagcttatcccaactcaatcatttataatacagttgga |
2907925 |
T |
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| Q |
201 |
tgtatataatactgctagattccaccaaaaagagttt |
237 |
Q |
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| T |
2907924 |
tgtatataacactgctagattccaccaaaaagagttt |
2907888 |
T |
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Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 85 - 168
Target Start/End: Complemental strand, 1516784 - 1516702
Alignment:
| Q |
85 |
gcttgcttatccaacatagcgaggttgaaagcataaatacagaagccggccgggatctttaaacttcttaggcacaataagctt |
168 |
Q |
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| T |
1516784 |
gcttgcgtatccaacatagcgagtttgaaagcataaata-ttacgaaagccaagatatttaaacttcttaggcacaataagctt |
1516702 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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