View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12976_low_15 (Length: 247)
Name: NF12976_low_15
Description: NF12976
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12976_low_15 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 13 - 247
Target Start/End: Complemental strand, 2908384 - 2908150
Alignment:
| Q |
13 |
aatattataaaccatagtggtaggaagcatacctcaaatcacttcaacatgccaagccttggaatggtgatgcagcgagtcttcgacacaaagatctgac |
112 |
Q |
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| T |
2908384 |
aatattataaaccatagtggtaggaagcatacctcaaatcacttcaacatgccaagccttggaatggtgatgcagcaagtcttcgacacaaagatctgac |
2908285 |
T |
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| Q |
113 |
cataacggagaaggatgagctgaacacttaaccttttcaatgctaaggtaccttccaacctggaatatgaccactccttccaaaactctacggaaaacct |
212 |
Q |
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| T |
2908284 |
cataacggagaaggatgagctgaacacttaaccttttcaatgccaatgtaccttccaacctggaatatgaccactccttccaaaactctacggaaaacct |
2908185 |
T |
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| Q |
213 |
tctttcacaaggcacttagctgaccagatactagc |
247 |
Q |
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| T |
2908184 |
tctttcacaaggcacttagctgaccagatactagc |
2908150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 95; Significance: 1e-46; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 13 - 246
Target Start/End: Complemental strand, 1517049 - 1516812
Alignment:
| Q |
13 |
aatattataaaccatagtggtaggaagcatacctcaaatcacttcaacatgccaagccttggaatggtgatgcagcgagtcttcgacacaaagatctgac |
112 |
Q |
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|||||||||| ||||||||||| | | ||||||||||||||||||||||||||||| ||||||||||||||| ||| |||||||||||| ||||||||| |
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| T |
1517049 |
aatattataagccatagtggtatggaacatacctcaaatcacttcaacatgccaagacttggaatggtgatgtagcaagtcttcgacac--agatctgac |
1516952 |
T |
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| Q |
113 |
cataacggagaaggatgagctgaacactt--------aaccttttcaatgctaaggtaccttccaacctggaatatgaccactccttccaaaactctacg |
204 |
Q |
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| T |
1516951 |
catgatggagaaagatgagccgagcacttaagaagagaaccttttcgaagccatggtgccttccaacctggaatctgatcgctccttccaatactctaag |
1516852 |
T |
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| Q |
205 |
gaaaaccttctttcacaaggcacttagctgaccagatactag |
246 |
Q |
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| T |
1516851 |
gaaaaccttcttt--caaggcacttagtcgaccagatactag |
1516812 |
T |
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