View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12976_low_16 (Length: 246)
Name: NF12976_low_16
Description: NF12976
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12976_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 46684596 - 46684366
Alignment:
| Q |
1 |
ttgtttgtgacaattttcagagggataccatacaagctgcatcaagttttgctcacaggaaccaattacctcctcgtttacaagatcaaatgcttgctca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46684596 |
ttgtttgtgacaattttcagagggataccatacaagctgcatcaagttttgctcacaggaaccaattacctcctcgtttacaagatcaaatgcttgctca |
46684497 |
T |
|
| Q |
101 |
cttgtgtttgaagtttagaacagactcggagggcttgcaacaacaggagacactcgagtctcttcctaaagccatcagatcaagcatttcacattatctt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46684496 |
cttgtgtttgaagtttagaacagactcggagggcttgcagcaacaggagacactcgagtctcttcctaaagccatcagatcaagcatttcacattatctt |
46684397 |
T |
|
| Q |
201 |
ttctattctctgatggataaggtttacttat |
231 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
46684396 |
ttctattctctgatggataaggtttacttat |
46684366 |
T |
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