View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12976_low_3 (Length: 422)
Name: NF12976_low_3
Description: NF12976
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12976_low_3 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 388; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 10 - 422
Target Start/End: Original strand, 46684594 - 46685008
Alignment:
| Q |
10 |
caatgagtttcacaattttaaaaacacgaaatccctaactaaaaaatattttggtacttacaaattttctagttcgacttgtgccatggacaactaagtt |
109 |
Q |
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| T |
46684594 |
caatgagtgtcacgattttaaaaacacgaaatccctaactaaaaaatatcttggtacttacaaattttctagttcgacttgtgccatggacaactaagtt |
46684693 |
T |
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| Q |
110 |
agtcatgttaccaatcagatatgctgttaatcctagattaaagagcatgtaaaatatgacaaagatcatctctctttcattcaccggatgcaaatctcca |
209 |
Q |
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| T |
46684694 |
agtcatgttaccaatcagatatgctgttaatcctagattaaagagcatgtaaaatatgacaaagatcatctctctttcattcaccggatgcaaatctcca |
46684793 |
T |
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| Q |
210 |
taaccaactgttgttaaagtagtgatggaccagtaaatagtcgtaacatatcttgtccacaaggactgctgaaggaaatctttcattgattcgccaatcc |
309 |
Q |
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| T |
46684794 |
taaccaactgttgttaaagtagtgatggaccagtaaatagtcgtaacatatcttgtccacaaggactgctgaaggaaatctttcattgattcgccaatcc |
46684893 |
T |
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| Q |
310 |
acgtcttttctggatcatgataacgcgcggcaagaagataataaaagcatccagcacagtgcacagcaaatagagtaacctatgaaaatcattcagatga |
409 |
Q |
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| T |
46684894 |
acgtcttttctggatcatgataacgcgcggcaagaagataataaaagcatccagcacagtgcacagcaaatagagtaacctatgaaaatcattcagatta |
46684993 |
T |
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| Q |
410 |
t--gtccatctcatt |
422 |
Q |
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| T |
46684994 |
ttagtccatctcatt |
46685008 |
T |
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