View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12976_low_6 (Length: 350)
Name: NF12976_low_6
Description: NF12976
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12976_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 313; Significance: 1e-176; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 19 - 343
Target Start/End: Original strand, 10054712 - 10055036
Alignment:
| Q |
19 |
ttgtatacgccttaaacgattgccctttttctttgtgtggcaacaatagtttcctaattcgtttcccctttcaattaggtgagcaatatcctttttgtgg |
118 |
Q |
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| T |
10054712 |
ttgtatacgccttaaacgattgccctttttctttgtgtggcaacaatagtttcctaattcgtttcccctttcaattaggtgagcaatatccttattgtgt |
10054811 |
T |
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| Q |
119 |
ctatcctggtttcaacttaagttgtaccaatgatagcaaaacaattctaaaacttccttactctgaagaattctacgtacgcagcataaactatctcaca |
218 |
Q |
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| T |
10054812 |
ctatcctggtttcaacttaagttgtaccaatgatagcaaaacaattctaaaacttccttactctgaagaattctacgtacgcagcataaactatctcaca |
10054911 |
T |
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| Q |
219 |
caacagatacaactctacgatcccgatgattgtcttccaaaacgtcttctaagcctcaatttttcaaattctcctttcattgcttcttttagtcgtgact |
318 |
Q |
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| T |
10054912 |
caacagatacaactctacgatcccgatgattgtcttccaaaacgtcttctaagactcaatttttcaaattctcctttcattgcttcttttagtcgtgact |
10055011 |
T |
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| Q |
319 |
acacattcttaggctgttcatctca |
343 |
Q |
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| T |
10055012 |
acacattcttaggctgttcatctca |
10055036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 95 - 178
Target Start/End: Complemental strand, 48473225 - 48473142
Alignment:
| Q |
95 |
aggtgagcaatatcctttttgtggctatcctggtttcaacttaagttgtaccaatgatagcaaaacaattctaaaacttcctta |
178 |
Q |
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| T |
48473225 |
aggtgatcaacatccttagtgtagctatcctggtttcaaattaagttgtactgatgatagcaaaacggttctaacacttcctta |
48473142 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 107 - 277
Target Start/End: Complemental strand, 48475841 - 48475671
Alignment:
| Q |
107 |
tcctttttgtggctatcctggtttcaacttaagttgtaccaatgatagcaaaacaattctaaaacttccttactctgaagaattctacgtacgcagcata |
206 |
Q |
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||||| ||||||||||||||||||||| || |||||| |||||| ||||||| |||||| ||||||||| || | || ||||| || |||| || |
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| T |
48475841 |
tccttattgtggctatcctggtttcaaattgtcttgtactaatgatggcaaaactgttctaacacttccttattcaggagtgttctatgttcgcaaaatc |
48475742 |
T |
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| Q |
207 |
aactatctcacacaacagatacaactctacgatcccgatgattgtcttccaaaacgtcttctaagcctcaa |
277 |
Q |
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| T |
48475741 |
aactatctcgaacaccacatacaagtctatgaccctcatcgttgccttccaaatcgtcttctaagtctcaa |
48475671 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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