View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12976_low_8 (Length: 338)
Name: NF12976_low_8
Description: NF12976
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12976_low_8 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 1 - 338
Target Start/End: Complemental strand, 33714220 - 33713877
Alignment:
| Q |
1 |
cacagacacaaacatcgaacacctcacatacaagtctacaccagtagtaatttgagaagacgacattatcgaatgtaatcagaagtgtggcatgtcacaa |
100 |
Q |
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| T |
33714220 |
cacaaacacaaacatcgaacacctcacatacaagtctacaccagtagtaatttgagaagatgacattatcgaatgtaatcagaagtgtggcatgtcacaa |
33714121 |
T |
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| Q |
101 |
aatattctgataagttcatattactgcattatccacttaaaaagttataaaattttgttatcaatattcaaataacaattctaaataagaagaaga---- |
196 |
Q |
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| T |
33714120 |
actattctgataagttcatattactgcattatccacttaaaaagttatcaaactttgttatcaatatacaaataacaattctaaataagaagaagaagaa |
33714021 |
T |
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| Q |
197 |
--agaacaaaccaaggtccccaacgaagaggaaaagtagaaagttcattcggtattctcgacgccatttcaaaatgaagcttattaacaatgcgttctga |
294 |
Q |
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| T |
33714020 |
gaagaacaaaccaaggtccccaacgaagaggaaaagtagaaagttcattcggtattctcgaggccatttcaaaatgaagcttattaacaatgcgttctga |
33713921 |
T |
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| Q |
295 |
atcagacattacagcttcagtgtacttctcttcttgctccatgt |
338 |
Q |
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| T |
33713920 |
atcagacattacagcttcagtgtacttctcttcttgctccatgt |
33713877 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 44 - 89
Target Start/End: Original strand, 7512206 - 7512251
Alignment:
| Q |
44 |
gtagtaatttgagaagacgacattatcgaatgtaatcagaagtgtg |
89 |
Q |
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| T |
7512206 |
gtagtaatttgagaaaatgacattattgaatgtaatcagatgtgtg |
7512251 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 43 - 83
Target Start/End: Original strand, 7512449 - 7512489
Alignment:
| Q |
43 |
agtagtaatttgagaagacgacattatcgaatgtaatcaga |
83 |
Q |
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| T |
7512449 |
agtagtaatttgagaaaatgacattattgaatgtaatcaga |
7512489 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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