View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12977_high_12 (Length: 504)
Name: NF12977_high_12
Description: NF12977
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12977_high_12 |
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Alignment Details
Target: chr3 (Bit Score: 266; Significance: 1e-148; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 49 - 354
Target Start/End: Complemental strand, 12765650 - 12765345
Alignment:
| Q |
49 |
ataatcgaaatgtgtctgacaccatttatatcttcgctatgaagcattgatgttatacaccttaactaatttttcaattactgattttaggttaattacc |
148 |
Q |
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| T |
12765650 |
ataatcaaaatgtgtcggacaccattcatatcttcgctataaagtgttgatattatacacgtcaactaatttttcaattgctgattttaggttaattacc |
12765551 |
T |
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| Q |
149 |
tttttagggatgcctataaaagtaagagatggagaaagtaaagggtggaaagtgtgctcatacaaaggccccactctgtcatcttctataaccaccattc |
248 |
Q |
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| T |
12765550 |
tttttagggatgcctataaaagtaagagatggagaaagtaaagggtggaaagtgtgctcatacaaaggccccactctgtcatcttctataaccaccattc |
12765451 |
T |
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| Q |
249 |
ctttggtgtcaagaaaagggaagctataggagtacctacaaaacaaccaattgatgaatttcaaaaacacttttaattattagtatacataactacttta |
348 |
Q |
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| T |
12765450 |
ctttggtgtcaagaaaagggaagctataggagtacctacaaaacaaccaattgatgaatttcaaaaacacttttaattattagtatacataactacttta |
12765351 |
T |
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| Q |
349 |
ctctaa |
354 |
Q |
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| T |
12765350 |
ctctaa |
12765345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 415 - 488
Target Start/End: Complemental strand, 12764664 - 12764591
Alignment:
| Q |
415 |
aaagatcataattattattcaatcataatgtatcttttccgcccaagttagtgaagtttagaagattgattttg |
488 |
Q |
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| T |
12764664 |
aaagatcctaattattattcaatcataatgtatcttttccgcccaagttagtgaagtttagaagattgattttg |
12764591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 16 - 73
Target Start/End: Complemental strand, 12765801 - 12765744
Alignment:
| Q |
16 |
atacgagtctttaatcagaattgtgaatgtaagataatcgaaatgtgtctgacaccat |
73 |
Q |
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| T |
12765801 |
atacgagtcttcaatcagaattgtgaatgtaagataatcgaaatgtgtcggacaccat |
12765744 |
T |
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