View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12977_high_19 (Length: 423)
Name: NF12977_high_19
Description: NF12977
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12977_high_19 |
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Alignment Details
Target: chr7 (Bit Score: 382; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 1 - 406
Target Start/End: Original strand, 39849100 - 39849505
Alignment:
| Q |
1 |
agcccgagccagagccagagcctcagcatgtcccgagtctaagtttgtgcacgaggcacaacaggtggaggttcagcaggagtaggcgtcgacacagcct |
100 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39849100 |
agccagagccagagccagagcctcagcatgtcccgagtctaagtttgtgcacgaggcacaacaggtggaggttcagcaggagtaggcgtcgacacagcct |
39849199 |
T |
|
| Q |
101 |
cggaagttacatcctagtggtccgtttgacatgctaaagcttttaaccttgataattcatgtatgcctgcctgtatgataagggtttactctcaccactc |
200 |
Q |
| |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39849200 |
cggaagttacatcctagtggtccgtttgacatgttaaagcttttaaccttgataattcatgtatgcctgcctgtatgataagggtttactctcaccactc |
39849299 |
T |
|
| Q |
201 |
tagcataaaatcgccctctcagaagatgcatatataagtatattcacttgtgtattttgtatcaaacagcgtaggctgaacatcaatacatacatgttat |
300 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
39849300 |
taccataaaatcgccctctcagaagatgcatatataagtatattcacttgtgtattttgtatcaaacagcgtaggctgaacatcaatacttacatgttat |
39849399 |
T |
|
| Q |
301 |
atgtatcatatgtgattgagttactagtcttcggtagaccatttatggttggtttatttgttcatcaaatgcaatgcatcgaatatttactttcctctct |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
39849400 |
atgtatcatatgtgattgagttactagtcttcggtagaccatttatggttggtttatttgttcatcaaatgcaatgcattgaatatttactttcctctct |
39849499 |
T |
|
| Q |
401 |
gctcct |
406 |
Q |
| |
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||||| |
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|
| T |
39849500 |
actcct |
39849505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 251 - 394
Target Start/End: Original strand, 3981351 - 3981494
Alignment:
| Q |
251 |
tgtattttgtatcaaacagcgtaggctgaacatcaatacatacatgttatatgtatcatatgtgattgagttactagtcttcggtagaccatttatggtt |
350 |
Q |
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|||||| ||||||||||| |||||| |||| || ||||| |||||||||| ||| | |||| | ||||| || ||||| |||||| | |||||||| |
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| T |
3981351 |
tgtattatgtatcaaacaacgtaggatgaagataaatacttacatgttatgtgttttatattatgtggagttgcttatcttcagtagactacttatggtt |
3981450 |
T |
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| Q |
351 |
ggtttatttgttcatcaaatgcaatgcatcgaatatttactttc |
394 |
Q |
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| T |
3981451 |
ggtttatttgttaaccatatgcaatgcatctaatatttactttc |
3981494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 251 - 406
Target Start/End: Complemental strand, 33973436 - 33973277
Alignment:
| Q |
251 |
tgtattttgtatcaaacagcgtaggctgaacatcaatacatacatgttatatgtat--catatgtgattgagttactagt--cttcggtagaccatttat |
346 |
Q |
| |
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|||||| ||||||||||||||| ||||| ||||||||| |||||||||||| | | ||| ||| | ||||||| || |||| |||||| | ||| |
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| T |
33973436 |
tgtattatgtatcaaacagcgtgggctgcgcatcaatacttacatgttatatatgttccatctgttgtagagttacgtgtgtcttcagtagactacttac |
33973337 |
T |
|
| Q |
347 |
ggttggtttatttgttcatcaaatgcaatgcatcgaatatttactttcctctctgctcct |
406 |
Q |
| |
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| ||||||||| |||||||||||| |||| |||| | ||||||||||||||||| ||||| |
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| T |
33973336 |
gattggtttatgtgttcatcaaattcaatacatcaagtatttactttcctctctactcct |
33973277 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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