View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12977_high_2 (Length: 1057)
Name: NF12977_high_2
Description: NF12977
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12977_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 293; Significance: 1e-164; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 753 - 1049
Target Start/End: Original strand, 4305680 - 4305976
Alignment:
| Q |
753 |
caaaacagtatgaatcatcacaacatgacacctatgaattttcaacaacttcctcatctcttcctacaagagattcctattttgggaaactccaggtaca |
852 |
Q |
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| T |
4305680 |
caaaacagtatgaatcatcacaacatgacacctatgaattttcaacaacttcctcatctcttcctacaagagattcctattttgggaaactccaggtgca |
4305779 |
T |
|
| Q |
853 |
aacatgttcttttttctacttaacttaacaagttcattaattcataccagtagtatataacatggtcaatttgcattaagttaattgttaaagttgtttt |
952 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4305780 |
aacatgttcttttttctacttaacttaacaagttcattaattcataccagtagtatataacatggtcaatttgcattaagttaattgttaaagttgtttt |
4305879 |
T |
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| Q |
953 |
attacagtgtaatgaaggctaatattaagaaggaagagcctaaatgtgcacaaatgacaatcttgtatgatgggaaagtaattgtgtttgatgatgt |
1049 |
Q |
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| T |
4305880 |
attacagtgtaatgaaggctaatattaagaaggaagagcctaaatgtgcacaaatgacaatcttgtatgatgggaaagtaattgtgtttgatgatgt |
4305976 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 259 - 603
Target Start/End: Original strand, 4305187 - 4305526
Alignment:
| Q |
259 |
aattcacggttttaaaacataatatcttcctcaacgtaatcatttaaatcacaaagacaatcacaattgagaattattaaaagatacctcgaccgaacca |
358 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| | |||||||||||| ||| | |
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| T |
4305187 |
aattcatggttttaaaacataatatcttcctcaacgtaatcatttaaatcacaaagaaaatcaaaattgagaattattagatgatacctcgaccaaacaa |
4305286 |
T |
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| Q |
359 |
ttaacatcaattttattttgaaacttattttataagttccccaagagatattttgagatgaaaaggaaagaagggataacctttatctttttcgaaagtg |
458 |
Q |
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| T |
4305287 |
ttagcatcaattttattttgaaacttattttataagttccccaagagatattttgagatgaaaaggaaagaagggataacctttatctttttcgaaagtg |
4305386 |
T |
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| Q |
459 |
atctaggcaaataaaataaataaaacgtgctgat-----atgggactaccaaaaagcaaaacaagtcattattcaattcaattcaattcaatgaatgatg |
553 |
Q |
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| T |
4305387 |
atctaggcaaataaaataaataaaacgtgctgatatgggatgggactaccaaaaagcaaaacaagtcatt----------attcaattcaatgaatgatg |
4305476 |
T |
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| Q |
554 |
taaccactaacaatggatgtggacctcccaacaccgctagcagtttctgt |
603 |
Q |
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| T |
4305477 |
caaccactaacaatggatgtggacctcccaacaccgctagcagtttctgt |
4305526 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 112; E-Value: 4e-56
Query Start/End: Original strand, 891 - 1049
Target Start/End: Original strand, 4311172 - 4311333
Alignment:
| Q |
891 |
aattcataccagtagtatataacatggtcaatttgcattaagttaattgttaaagttgttt---tattacagtgtaatgaaggctaatattaagaaggaa |
987 |
Q |
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||||||||| || |||||||| ||||||||||||||||||| ||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
4311172 |
aattcatactagaagtatatagcatggtcaatttgcattaaattaattgttaatgttgtttaattattacagtgtaatgaaggctaatattaagaaggag |
4311271 |
T |
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| Q |
988 |
gagcctaaatgtgcacaaatgacaatcttgtatgatgggaaagtaattgtgtttgatgatgt |
1049 |
Q |
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||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
4311272 |
gagcctagttgtgcacaaatgacaatcttttatgatgggaaagtaattgtgtttgatgatgt |
4311333 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 104; E-Value: 3e-51
Query Start/End: Original strand, 908 - 1047
Target Start/End: Original strand, 4300774 - 4300913
Alignment:
| Q |
908 |
tataacatggtcaatttgcattaagttaattgttaaagttgttttattacagtgtaatgaaggctaatattaagaaggaagagcctaaatgtgcacaaat |
1007 |
Q |
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|||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||| | ||||| |
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| T |
4300774 |
tataacatggtcaatttgcattaaattaattgttaatgttgttttattacagtgtaatgaaggctaatattatcaaggaagagcctaaatgtacccaaat |
4300873 |
T |
|
| Q |
1008 |
gacaatcttgtatgatgggaaagtaattgtgtttgatgat |
1047 |
Q |
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|||||| || |||||||||||| ||||||||||||||||| |
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| T |
4300874 |
gacaattttttatgatgggaaaataattgtgtttgatgat |
4300913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 96; E-Value: 2e-46
Query Start/End: Original strand, 762 - 873
Target Start/End: Original strand, 4311019 - 4311130
Alignment:
| Q |
762 |
atgaatcatcacaacatgacacctatgaattttcaacaacttcctcatctcttcctacaagagattcctattttgggaaactccaggtacaaacatgttc |
861 |
Q |
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|||||||||||||| || ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
4311019 |
atgaatcatcacaatataacacctatgaattttcaacaatttcctcatctcttcctacaagagattcctattttgggaaactccaggtacatacatgttc |
4311118 |
T |
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| Q |
862 |
ttttttctactt |
873 |
Q |
| |
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|||||||||||| |
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| T |
4311119 |
ttttttctactt |
4311130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 91; E-Value: 2e-43
Query Start/End: Original strand, 650 - 755
Target Start/End: Original strand, 4305549 - 4305652
Alignment:
| Q |
650 |
tcgtgtgtgtttttagctcctcacatgcataaatacaatatactatagtagtactagtaatagtataaagcttccaccgctctctcatcactctcacttt |
749 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
4305549 |
tcgtgtgtgtttttagctcctcacatgcataaatacaatatacta--gtagtactagtaatagtataaagcttccaccgctctctcttcactctcacttt |
4305646 |
T |
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| Q |
750 |
cttcaa |
755 |
Q |
| |
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|||||| |
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| T |
4305647 |
cttcaa |
4305652 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 73; E-Value: 8e-33
Query Start/End: Original strand, 361 - 531
Target Start/End: Original strand, 4310596 - 4310779
Alignment:
| Q |
361 |
aacatcaattttattttgaaacttattttataagttccccaagagatattttgagatgaaaaggaaagaagggataacctttatctttttcgaaagt--- |
457 |
Q |
| |
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|||||||| ||||| |||| ||| ||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| ||| | |||| |
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| T |
4310596 |
aacatcaactttatgttgagact-attttatgagttccccaagagacattttgagatgaaaaggaaagaagggataaccttttagctttgcccaagtaac |
4310694 |
T |
|
| Q |
458 |
----------gatctaggcaaataaaataaataaaacgtgctgatatgggacta-ccaaaaagcaaaacaagtcattattcaatt |
531 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||| |
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| T |
4310695 |
ttgatcatttgatctaggcaaataaaataaataaaacgtgctgatatgggactacccaaaaaccaaaacaagtcattattcaatt |
4310779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 982 - 1047
Target Start/End: Original strand, 4294311 - 4294376
Alignment:
| Q |
982 |
aaggaagagcctaaatgtgcacaaatgacaatcttgtatgatgggaaagtaattgtgtttgatgat |
1047 |
Q |
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||||||||||||| |||||||||||||||||| || |||||||||||||||||||||||||||||| |
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| T |
4294311 |
aaggaagagcctagatgtgcacaaatgacaattttttatgatgggaaagtaattgtgtttgatgat |
4294376 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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