View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12977_high_31 (Length: 327)
Name: NF12977_high_31
Description: NF12977
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12977_high_31 |
 | |
|
| [»] chr1 (1 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 1 - 327
Target Start/End: Original strand, 34297099 - 34297425
Alignment:
| Q |
1 |
catgtccaagaccatatctatcttgaatcgggattttcctgaattggatgttgtagatgaagaatgtagagaaatgagttggattgagtcagttgnnnnn |
100 |
Q |
| |
|
|||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34297099 |
catgtccaaggccatatctatcttgaatcaggattttcctgaattggatgttgtagatgaagaatgtagagaaatgagttggattgagtcagttgttttt |
34297198 |
T |
|
| Q |
101 |
nnctcaggactaaatgatggagcttctgtttctgacttgaggaataggtatatgcaagataaagaatatttcaaggcaaaatcagattttgtaaggagct |
200 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34297199 |
ttctctggactaaatgatggagcttctgtttctgacttgaggaataggtatatgcaagataaagaatatttcaaggcaaaatcagattttgtaaggagct |
34297298 |
T |
|
| Q |
201 |
atgttcctcttgtaggtataaaaactgcattggatattctagaaaaggagcctaaagggtttgttattttagacccttatggtgggatgatgcataatat |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34297299 |
atgttcctcttgtaggtataaaaactgcattggatattctagaaaaggagcctaaagggtttgttattttagacccttatggtgggatgatgcataatat |
34297398 |
T |
|
| Q |
301 |
aagcagcgaatctattgcttttcccca |
327 |
Q |
| |
|
|||||| ||||| |||||||||||||| |
|
|
| T |
34297399 |
aagcagtgaatccattgcttttcccca |
34297425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University