View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12977_high_35 (Length: 278)

Name: NF12977_high_35
Description: NF12977
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12977_high_35
NF12977_high_35
[»] scaffold0083 (1 HSPs)
scaffold0083 (57-272)||(54372-54584)
[»] chr3 (24 HSPs)
chr3 (57-272)||(9980553-9980765)
chr3 (57-272)||(10035090-10035302)
chr3 (57-272)||(10263788-10264000)
chr3 (19-224)||(9852926-9853128)
chr3 (19-224)||(10520534-10520736)
chr3 (52-272)||(10130004-10130214)
chr3 (57-216)||(10583669-10583829)
chr3 (52-224)||(9841940-9842109)
chr3 (53-177)||(10666618-10666742)
chr3 (53-166)||(10430914-10431027)
chr3 (26-181)||(10372768-10372924)
chr3 (57-181)||(10360658-10360783)
chr3 (52-167)||(11778855-11778969)
chr3 (57-179)||(10531868-10531989)
chr3 (52-167)||(11772316-11772430)
chr3 (52-177)||(10092077-10092202)
chr3 (52-177)||(10198959-10199084)
chr3 (204-272)||(10430718-10430786)
chr3 (63-177)||(10503744-10503857)
chr3 (57-177)||(10680666-10680785)
chr3 (60-149)||(10086265-10086354)
chr3 (60-149)||(10193185-10193274)
chr3 (61-149)||(11242462-11242551)
chr3 (85-131)||(8585532-8585578)
[»] chr2 (1 HSPs)
chr2 (57-131)||(26909975-26910049)
[»] chr4 (1 HSPs)
chr4 (63-149)||(17849813-17849899)
[»] chr8 (2 HSPs)
chr8 (65-149)||(44954550-44954634)
chr8 (94-131)||(11488217-11488254)


Alignment Details
Target: scaffold0083 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 57 - 272
Target Start/End: Complemental strand, 54584 - 54372
Alignment:
Q  57 ccattgttagaagaaaggtataaaaggaaggaacattggtccaaaattgctcacatccctgtcatacaaataaattacaaagtcacaatatgatagacaa 156  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||    
T  54584 ccattgttagaagaaaggtataaaaggaaggaacattggtccaaaattgctcacatccctgtcatatcaataaattacaaagtcacaatatgatagacaa 54485  T
Q  157 gttgtgttcccatttcaggtatgttccacagttcctaccagaaaactgccaataatcaatcatctgtacgacacacctcttaatattttcatatcatctc 256  Q
    ||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54484 gttgtgttcccatttcaggtatgttccacagttcctaccagaaa---gccaataatcaatcatctgtacgacacacctcttaatattttcatatcatctc 54388  T
Q  257 atgggtcctatgctac 272  Q
    ||||||||| ||||||    
T  54387 atgggtcctctgctac 54372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 190; Significance: 1e-103; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 57 - 272
Target Start/End: Original strand, 9980553 - 9980765
Alignment:
Q  57 ccattgttagaagaaaggtataaaaggaaggaacattggtccaaaattgctcacatccctgtcatacaaataaattacaaagtcacaatatgatagacaa 156  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||    
T  9980553 ccattgttagaagaaaggtataaaaggaaggaacattggtccaaaattgctcacatccctgtcatatcaataaattacaaagtcacaatatgatagacaa 9980652  T
Q  157 gttgtgttcccatttcaggtatgttccacagttcctaccagaaaactgccaataatcaatcatctgtacgacacacctcttaatattttcatatcatctc 256  Q
    ||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9980653 gttgtgttcccatttcaggtatgttccacagttcctaccagaaa---gccaataatcaatcatctgtacgacacacctcttaatattttcatatcatctc 9980749  T
Q  257 atgggtcctatgctac 272  Q
    ||||||||| ||||||    
T  9980750 atgggtcctctgctac 9980765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 57 - 272
Target Start/End: Original strand, 10035090 - 10035302
Alignment:
Q  57 ccattgttagaagaaaggtataaaaggaaggaacattggtccaaaattgctcacatccctgtcatacaaataaattacaaagtcacaatatgatagacaa 156  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | |||||| |  |||||||||||||||||||||    
T  10035090 ccattgttagaagaaaggtataaaaggaaggaacattggtccaaaattgctcacatccctttcatagatataaatcatgaagtcacaatatgatagacaa 10035189  T
Q  157 gttgtgttcccatttcaggtatgttccacagttcctaccagaaaactgccaataatcaatcatctgtacgacacacctcttaatattttcatatcatctc 256  Q
    ||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10035190 gttgtgttcccatttcaggtatgttccacagttcctaccagaaa---gccaataatcaatcatctgtacgacacacctcttaatattttcatatcatctc 10035286  T
Q  257 atgggtcctatgctac 272  Q
    ||||||||| ||||||    
T  10035287 atgggtcctctgctac 10035302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 57 - 272
Target Start/End: Original strand, 10263788 - 10264000
Alignment:
Q  57 ccattgttagaagaaaggtataaaaggaaggaacattggtccaaaattgctcacatccctgtcatacaaataaattacaaagtcacaatatgatagacaa 156  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||  ||||||| |  |||||||||||||||||||||    
T  10263788 ccattgttagaagaaaggtataaaaggaaggaacattagtccaaaattgctcacatccctttcataagaataaatgatgaagtcacaatatgatagacaa 10263887  T
Q  157 gttgtgttcccatttcaggtatgttccacagttcctaccagaaaactgccaataatcaatcatctgtacgacacacctcttaatattttcatatcatctc 256  Q
    ||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10263888 gttgtgttcccatttcaggtatgttccacagttcctaccagaaa---gccaataatcaatcatctgtacgacacacctcttaatattttcatatcatctc 10263984  T
Q  257 atgggtcctatgctac 272  Q
    ||||||||| ||||||    
T  10263985 atgggtcctctgctac 10264000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 144; E-Value: 9e-76
Query Start/End: Original strand, 19 - 224
Target Start/End: Original strand, 9852926 - 9853128
Alignment:
Q  19 tccctgactctctgaagagactggagatcagtcgatgtccattgttagaagaaaggtataaaaggaaggaacattggtccaaaattgctcacatccctgt 118  Q
    |||||||||| |||||||||||||| ||   | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9852926 tccctgactcactgaagagactggacatttatggatgtccattgttagaagaaaggtataaaaggaaggaacattggtccaaaattgctcacatccctgt 9853025  T
Q  119 catacaaataaattacaaagtcacaatatgatagacaagttgtgttcccatttcaggtatgttccacagttcctaccagaaaactgccaataatcaatca 218  Q
    |||| |||||||| || | || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||     
T  9853026 catagaaataaatgaccaggttacaatatgatagacaagttgtgttcccatttcaggtatgttccacagttcctaccagaaa---gccaataatcaatcc 9853122  T
Q  219 tctgta 224  Q
    ||||||    
T  9853123 tctgta 9853128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 19 - 224
Target Start/End: Original strand, 10520534 - 10520736
Alignment:
Q  19 tccctgactctctgaagagactggagatcagtcgatgtccattgttagaagaaaggtataaaaggaaggaacattggtccaaaattgctcacatccctgt 118  Q
    |||||||||||||||||||||||   ||  |   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  10520534 tccctgactctctgaagagactgctcatttgggaatgtccattgttagaagaaaggtataaaaggaaggaacattggtccaaaattgctcacatcccagt 10520633  T
Q  119 catacaaataaattacaaagtcacaatatgatagacaagttgtgttcccatttcaggtatgttccacagttcctaccagaaaactgccaataatcaatca 218  Q
    ||||  |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||     
T  10520634 catatcaataaattaccaagtcacaatatgatagacaagttgtgttcccatttcaggtatgttccacagttcctaccagaaa---gccaataatcaatcc 10520730  T
Q  219 tctgta 224  Q
    ||||||    
T  10520731 tctgta 10520736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 52 - 272
Target Start/End: Original strand, 10130004 - 10130214
Alignment:
Q  52 gatgtccattgttagaagaaaggtataaaaggaaggaacattggtccaaaattgctcacatccctgtcatacaaataaattacaaagtcacaatatgata 151  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||| | | ||      ||||| ||||||||||||    
T  10130004 gatgtccattgttagaagaaaggtataaaaggaaggaacattgctccaaaattgctcacatccctttcaaaaatat------caaaggcacaatatgata 10130097  T
Q  152 gacaagttgtgttcccatttcaggtatgttccacagttcctaccagaaaactgccaataatcaatcatctgtacgacacacctcttaatattttcatatc 251  Q
    |||||||||||||||||||||||||||| |||  |||||||||||||||   |||||||||||||| |||||||||||||||||||||||||||||||||    
T  10130098 gacaagttgtgttcccatttcaggtatgctcct-agttcctaccagaaa---gccaataatcaatcctctgtacgacacacctcttaatattttcatatc 10130193  T
Q  252 atctcatgggtcctatgctac 272  Q
    |||||||||||||| ||||||    
T  10130194 atctcatgggtcctctgctac 10130214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 57 - 216
Target Start/End: Original strand, 10583669 - 10583829
Alignment:
Q  57 ccattgttagaagaaaggtataaaaggaaggaacattggtccaaaattgctcacatccctgtcatacaaataaattacaaagtcacaatatgatagacaa 156  Q
    ||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  10583669 ccattgttagaagaaaggtataaaaggaatgaatattggtccaaaattgctcacatccctgtcatacaaataaatcacaaagtcacaatatgatagacaa 10583768  T
Q  157 gttgtgttccc-atttcaggtatgttccacagttcctaccagaaaactgccaataatcaat 216  Q
    |||||||||||  |||||||||||||||||| |||||||||||||||||||||||||||||    
T  10583769 gttgtgttcccgttttcaggtatgttccacatttcctaccagaaaactgccaataatcaat 10583829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 52 - 224
Target Start/End: Original strand, 9841940 - 9842109
Alignment:
Q  52 gatgtccattgttagaagaaaggtataaaaggaaggaacattggtccaaaattgctcacatccctgtcatacaaataaattacaaagtcacaatatgata 151  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||   |||||  || |||||| |||||||||    
T  9841940 gatgtccattgttagaagaaaggtataaaaggaaggaacattgctccaaaattgctcacatccctgtcatatggataaaccaccaagtcagaatatgata 9842039  T
Q  152 gacaagttgtgttcccatttcaggtatgttccacagttcctaccagaaaactgccaataatcaatcatctgta 224  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||   |||||||||||||| ||||||    
T  9842040 gacaagttgtgttcccgtttcaggtatgttccacagttcctaccagaaa---gccaataatcaatcctctgta 9842109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 53 - 177
Target Start/End: Original strand, 10666618 - 10666742
Alignment:
Q  53 atgtccattgttagaagaaaggtataaaaggaaggaacattggtccaaaattgctcacatccctgtcatacaaataaattacaaagtcacaatatgatag 152  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||    
T  10666618 atgtccattgttagaagaaaggtataaaaggaaggaacattggtccaaaattgctcacatccctgtcatatcaataaattacaaagtcacaatatgatag 10666717  T
Q  153 acaagttgtgttcccatttcaggta 177  Q
    || |||||||||||  |||||||||    
T  10666718 acgagttgtgttcctgtttcaggta 10666742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 53 - 166
Target Start/End: Complemental strand, 10431027 - 10430914
Alignment:
Q  53 atgtccattgttagaagaaaggtataaaaggaaggaacattggtccaaaattgctcacatccctgtcatacaaataaattacaaagtcacaatatgatag 152  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| |  |||||||||||||||||    
T  10431027 atgtccattgttagaagaaaggtataaaaggaaggaacattggtccaaaattgctcacatccctgtcatagatataaatgatgaagtcacaatatgatag 10430928  T
Q  153 acaagttgtgttcc 166  Q
    ||||||||||||||    
T  10430927 acaagttgtgttcc 10430914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 26 - 181
Target Start/End: Complemental strand, 10372924 - 10372768
Alignment:
Q  26 ctctctgaagagactggagatcagtcgatgtccattgttagaagaaaggtataaaaggaaggaacattggtccaaaattgctcacatccctgtcatacaa 125  Q
    |||||||||||||||||  || |   |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||    
T  10372924 ctctctgaagagactggtcattatgggatgcccattgttagaagaaaggtataaaaggaaggaacattggtccaaaattgctcacatccccgtcataaaa 10372825  T
Q  126 ataaattacaaagtcacaatatgatagacaagttgtgttccc-atttcaggtatgtt 181  Q
    |||||  || || |||||||||||||||||||||||||||||  |||||||||||||    
T  10372824 ataaacgaccaaatcacaatatgatagacaagttgtgttcccgttttcaggtatgtt 10372768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 57 - 181
Target Start/End: Complemental strand, 10360783 - 10360658
Alignment:
Q  57 ccattgttagaagaaaggtataaaaggaaggaacattggtccaaaattgctcacatccctgtcatacaaataaattacaaagtcacaatatgatagacaa 156  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||| |||||||  || |||||||||||||||||||||    
T  10360783 ccattgttagaagaaaggtataaaaggaaggaacattgctccaaaattgctcacatccccgtcataaaaataaacgaccaagtcacaatatgatagacaa 10360684  T
Q  157 gttgtgttccc-atttcaggtatgtt 181  Q
    |||||||||||  |||||||||||||    
T  10360683 gttgtgttcccgttttcaggtatgtt 10360658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 52 - 167
Target Start/End: Complemental strand, 11778969 - 11778855
Alignment:
Q  52 gatgtccattgttagaagaaaggtataaaaggaaggaacattggtccaaaattgctcacatccctgtcatacaaataaattacaaagtcacaatatgata 151  Q
    |||| ||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| |||||||| | ||||||||||||||| |    
T  11778969 gatgcccattgttagaagaaaggtataaaaggaaagaacattggtccaaaatcgctcacatccctgtcatagaaataaatgaaaaagtcacaatatgaga 11778870  T
Q  152 gacaagttgtgttccc 167  Q
     ||||| |||||||||    
T  11778869 -acaagctgtgttccc 11778855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 57 - 179
Target Start/End: Original strand, 10531868 - 10531989
Alignment:
Q  57 ccattgttagaagaaaggtataaaaggaaggaacattggtccaaaattgctcacatccctgtcatacaaataaattacaaagtcacaatatgatagacaa 156  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||  ||||||  |  |||| ||||||||| ||||||    
T  10531868 ccattgttagaagaaaggtataaaaggaaggaaaattggtccaaaatttctcacatccctgtcataataataaacaagcaagttacaatatga-agacaa 10531966  T
Q  157 gttgtgttcccatttcaggtatg 179  Q
    ||||||||||| |||||||||||    
T  10531967 gttgtgttcccgtttcaggtatg 10531989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 52 - 167
Target Start/End: Original strand, 11772316 - 11772430
Alignment:
Q  52 gatgtccattgttagaagaaaggtataaaaggaaggaacattggtccaaaattgctcacatccctgtcatacaaataaattacaaagtcacaatatgata 151  Q
    |||| ||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| | |||||| | ||||||||||||||| |    
T  11772316 gatgcccattgttagaagaaaggtataaaaggaaagaacattggtccaaaatcgctcacatccctgtcatagatataaatgaaaaagtcacaatatgaga 11772415  T
Q  152 gacaagttgtgttccc 167  Q
     ||||| |||||||||    
T  11772416 -acaagctgtgttccc 11772430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 52 - 177
Target Start/End: Original strand, 10092077 - 10092202
Alignment:
Q  52 gatgtccattgttagaagaaaggtataaaaggaaggaacattggtccaaaattgctcacatccctgtcatacaaataaattacaaagtcacaatatgata 151  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||   ||||||  || ||  ||||||||||||    
T  10092077 gatgcccattgttagaagaaaggtataaaaggaaggaacattggtccaaaatttctcacatccctgtcatcacaataaacaaccaacgcacaatatgata 10092176  T
Q  152 gacaagttgtgttcccatttcaggta 177  Q
    |||||| |||| |||  |||||||||    
T  10092177 gacaagctgtgctcctgtttcaggta 10092202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 52 - 177
Target Start/End: Original strand, 10198959 - 10199084
Alignment:
Q  52 gatgtccattgttagaagaaaggtataaaaggaaggaacattggtccaaaattgctcacatccctgtcatacaaataaattacaaagtcacaatatgata 151  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||   ||||||  || ||  ||||||||||||    
T  10198959 gatgcccattgttagaagaaaggtataaaaggaaggaacattggtccaaaatttctcacatccctgtcatcacaataaacaaccaacgcacaatatgata 10199058  T
Q  152 gacaagttgtgttcccatttcaggta 177  Q
    |||||| |||| |||  |||||||||    
T  10199059 gacaagctgtgctcctgtttcaggta 10199084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 204 - 272
Target Start/End: Complemental strand, 10430786 - 10430718
Alignment:
Q  204 gccaataatcaatcatctgtacgacacacctcttaatattttcatatcatctcatgggtcctatgctac 272  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  10430786 gccaataatcaatcatctgtacgacacacctcttaatattttcatatcatctcatgggtcctctgctac 10430718  T

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Target: chr3; HSP #19
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 63 - 177
Target Start/End: Original strand, 10503744 - 10503857
Alignment:
Q  63 ttagaagaaaggtataaaaggaaggaacattggtccaaaattgctcacatccctgtcatacaaataaattacaaagtcacaatatgatagacaagttgtg 162  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| ||    ||||||||||||||  |||| | ||||    
T  10503744 ttagaagaaaggtataaaaggaaggaacattggtccaaaatttctcacatccctgtcatagaaatagatggacaagtcacaatatga-ggacaggctgtg 10503842  T
Q  163 ttcccatttcaggta 177  Q
    ||||| |||||||||    
T  10503843 ttcccgtttcaggta 10503857  T

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Target: chr3; HSP #20
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 57 - 177
Target Start/End: Original strand, 10680666 - 10680785
Alignment:
Q  57 ccattgttagaagaaaggtataaaaggaaggaacattggtccaaaattgctcacatccctgtcatacaaataaattacaaagtcacaatatgatagacaa 156  Q
    ||||||||||||||||||||||||||||| |||||| ||||||||||| |||||||||||||||||  ||||||  |  ||||||||||||||  | |||    
T  10680666 ccattgttagaagaaaggtataaaaggaatgaacatcggtccaaaatttctcacatccctgtcataataataaacaagcaagtcacaatatga-ggtcaa 10680764  T
Q  157 gttgtgttcccatttcaggta 177  Q
    |||||||| || |||||||||    
T  10680765 gttgtgtttccgtttcaggta 10680785  T

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Target: chr3; HSP #21
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 60 - 149
Target Start/End: Original strand, 10086265 - 10086354
Alignment:
Q  60 ttgttagaagaaaggtataaaaggaaggaacattggtccaaaattgctcacatccctgtcatacaaataaattacaaagtcacaatatga 149  Q
    |||||| |||||||||||||||||||||||||||||||||||||| ||| ||| ||||||||| ||||||||  | || |||||||||||    
T  10086265 ttgttaaaagaaaggtataaaaggaaggaacattggtccaaaatttctctcattcctgtcataaaaataaatggcgaaatcacaatatga 10086354  T

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Target: chr3; HSP #22
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 60 - 149
Target Start/End: Original strand, 10193185 - 10193274
Alignment:
Q  60 ttgttagaagaaaggtataaaaggaaggaacattggtccaaaattgctcacatccctgtcatacaaataaattacaaagtcacaatatga 149  Q
    |||||| |||||||||||||||||||||||||||||||||||||| ||| ||| ||||||||| ||||||||  | || |||||||||||    
T  10193185 ttgttaaaagaaaggtataaaaggaaggaacattggtccaaaatttctctcattcctgtcataaaaataaatggcgaaatcacaatatga 10193274  T

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Target: chr3; HSP #23
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 61 - 149
Target Start/End: Complemental strand, 11242551 - 11242462
Alignment:
Q  61 tgttagaagaaaggtataaaaggaaggaacattggtccaaaattgctcacatccctgtcatacaaataaatta-caaagtcacaatatga 149  Q
    ||||||||||||||||| ||| | ||||||||||||||||||| ||||||||  |||||| |  ||||||| | | ||||||||||||||    
T  11242551 tgttagaagaaaggtatcaaaagcaggaacattggtccaaaatagctcacattactgtcaaaataataaatgacccaagtcacaatatga 11242462  T

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Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 85 - 131
Target Start/End: Complemental strand, 8585578 - 8585532
Alignment:
Q  85 aggaacattggtccaaaattgctcacatccctgtcatacaaataaat 131  Q
    |||||||||||||||| ||||||||||| ||||||||| | ||||||    
T  8585578 aggaacattggtccaacattgctcacatacctgtcataaatataaat 8585532  T

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Target: chr2 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 57 - 131
Target Start/End: Original strand, 26909975 - 26910049
Alignment:
Q  57 ccattgttagaagaaaggtataaaaggaaggaacattggtccaaaattgctcacatccctgtcatacaaataaat 131  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26909975 ccattgttagaagaaaggtacaaaaggaaggaacattggtccaaaattgctcacatccctgtcatacaaataaat 26910049  T

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Target: chr4 (Bit Score: 59; Significance: 5e-25; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 63 - 149
Target Start/End: Complemental strand, 17849899 - 17849813
Alignment:
Q  63 ttagaagaaaggtataaaaggaaggaacattggtccaaaattgctcacatccctgtcatacaaataaattacaaagtcacaatatga 149  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||  |  || ||||||||||||||    
T  17849899 ttagaagaaaggtataaaaggcaggaacattggtccaaaattgctcacatccctgtcatagaaattgaggaccaagtcacaatatga 17849813  T

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Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 65 - 149
Target Start/End: Complemental strand, 44954634 - 44954550
Alignment:
Q  65 agaagaaaggtataaaaggaaggaacattggtccaaaattgctcacatccctgtcatacaaataaattacaaagtcacaatatga 149  Q
    |||||||||||||| |||||||||||||||||||||||||||| | || | ||||||| ||||| ||  | ||||||||||||||    
T  44954634 agaagaaaggtatagaaggaaggaacattggtccaaaattgctaaaattcatgtcatagaaatagatggccaagtcacaatatga 44954550  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 94 - 131
Target Start/End: Original strand, 11488217 - 11488254
Alignment:
Q  94 ggtccaaaattgctcacatccctgtcatacaaataaat 131  Q
    ||||||||||||||||||||||||||| | ||||||||    
T  11488217 ggtccaaaattgctcacatccctgtcaaagaaataaat 11488254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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