View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12977_high_36 (Length: 274)

Name: NF12977_high_36
Description: NF12977
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12977_high_36
NF12977_high_36
[»] chr8 (2 HSPs)
chr8 (8-86)||(12700500-12700578)
chr8 (150-179)||(12700640-12700669)
[»] scaffold0065 (2 HSPs)
scaffold0065 (8-82)||(66585-66659)
scaffold0065 (147-179)||(66724-66756)
[»] chr7 (6 HSPs)
chr7 (8-86)||(10015489-10015567)
chr7 (8-86)||(37548530-37548608)
chr7 (8-86)||(36628747-36628825)
chr7 (8-69)||(15995301-15995362)
chr7 (147-179)||(10015398-10015430)
chr7 (147-179)||(37548436-37548468)
[»] chr5 (5 HSPs)
chr5 (8-86)||(32699027-32699105)
chr5 (8-86)||(43323467-43323545)
chr5 (8-80)||(5120479-5120551)
chr5 (147-179)||(32699164-32699196)
chr5 (147-179)||(43323370-43323402)
[»] chr3 (4 HSPs)
chr3 (8-86)||(33443821-33443899)
chr3 (8-86)||(9467217-9467295)
chr3 (147-179)||(33443961-33443993)
chr3 (147-179)||(9467123-9467155)
[»] chr4 (2 HSPs)
chr4 (8-86)||(56366631-56366709)
chr4 (147-179)||(56366540-56366572)
[»] chr6 (1 HSPs)
chr6 (8-86)||(4090529-4090606)
[»] chr2 (2 HSPs)
chr2 (8-86)||(9913262-9913340)
chr2 (20-86)||(43672582-43672648)


Alignment Details
Target: chr8 (Bit Score: 67; Significance: 8e-30; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 8 - 86
Target Start/End: Original strand, 12700500 - 12700578
Alignment:
Q  8 attattctcaagtgctaaaattttagtctatatttttcaaatgataaattttcagtctactttgtatgtgctacagttc 86  Q
    ||||||||||||||||||||||||||||||||||| ||||||| |||| ||||||||||||||||||||||||||||||    
T  12700500 attattctcaagtgctaaaattttagtctatatttctcaaatgctaaaatttcagtctactttgtatgtgctacagttc 12700578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 150 - 179
Target Start/End: Original strand, 12700640 - 12700669
Alignment:
Q  150 atgtagcctaaaaaatatttatctggtagt 179  Q
    ||||||||||||||||||||||||||||||    
T  12700640 atgtagcctaaaaaatatttatctggtagt 12700669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0065 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: scaffold0065
Description:

Target: scaffold0065; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 8 - 82
Target Start/End: Original strand, 66585 - 66659
Alignment:
Q  8 attattctcaagtgctaaaattttagtctatatttttcaaatgataaattttcagtctactttgtatgtgctaca 82  Q
    ||||||||||||||||||||||||||||||||||| ||||||| |||| ||||||||||||||||||||||||||    
T  66585 attattctcaagtgctaaaattttagtctatatttctcaaatgctaaaatttcagtctactttgtatgtgctaca 66659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0065; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 147 - 179
Target Start/End: Original strand, 66724 - 66756
Alignment:
Q  147 aagatgtagcctaaaaaatatttatctggtagt 179  Q
    |||||||||||||||| ||||||||||||||||    
T  66724 aagatgtagcctaaaatatatttatctggtagt 66756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 63; Significance: 2e-27; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 8 - 86
Target Start/End: Complemental strand, 10015567 - 10015489
Alignment:
Q  8 attattctcaagtgctaaaattttagtctatatttttcaaatgataaattttcagtctactttgtatgtgctacagttc 86  Q
    |||||| |||||||||||||||||||||||||||| ||||||| |||| ||||||||||||||||||||||||||||||    
T  10015567 attattttcaagtgctaaaattttagtctatatttctcaaatgctaaaatttcagtctactttgtatgtgctacagttc 10015489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 8 - 86
Target Start/End: Complemental strand, 37548608 - 37548530
Alignment:
Q  8 attattctcaagtgctaaaattttagtctatatttttcaaatgataaattttcagtctactttgtatgtgctacagttc 86  Q
    |||||| |||||||||||||||||||||||||||| ||||||| |||| |||||||||| ||| |||||||||||||||    
T  37548608 attattatcaagtgctaaaattttagtctatatttctcaaatgctaaaatttcagtctattttatatgtgctacagttc 37548530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 8 - 86
Target Start/End: Original strand, 36628747 - 36628825
Alignment:
Q  8 attattctcaagtgctaaaattttagtctatatttttcaaatgataaattttcagtctactttgtatgtgctacagttc 86  Q
    ||||||||||||||||||||||||||||||||||| ||||||| |||| ||| ||||||||||| ||||| || |||||    
T  36628747 attattctcaagtgctaaaattttagtctatatttctcaaatgctaaaatttaagtctactttgcatgtgttatagttc 36628825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 8 - 69
Target Start/End: Original strand, 15995301 - 15995362
Alignment:
Q  8 attattctcaagtgctaaaattttagtctatatttttcaaatgataaattttcagtctactt 69  Q
    |||||||||| |||||||||||||||||| ||||||||| ||| |||| |||||| ||||||    
T  15995301 attattctcaggtgctaaaattttagtctttatttttcagatgctaaaatttcagcctactt 15995362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 147 - 179
Target Start/End: Complemental strand, 10015430 - 10015398
Alignment:
Q  147 aagatgtagcctaaaaaatatttatctggtagt 179  Q
    |||||||||||||||||||||||||||| ||||    
T  10015430 aagatgtagcctaaaaaatatttatctgatagt 10015398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 147 - 179
Target Start/End: Complemental strand, 37548468 - 37548436
Alignment:
Q  147 aagatgtagcctaaaaaatatttatctggtagt 179  Q
    |||||||||||||||||| ||||||||||||||    
T  37548468 aagatgtagcctaaaaaagatttatctggtagt 37548436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 63; Significance: 2e-27; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 8 - 86
Target Start/End: Original strand, 32699027 - 32699105
Alignment:
Q  8 attattctcaagtgctaaaattttagtctatatttttcaaatgataaattttcagtctactttgtatgtgctacagttc 86  Q
    ||||||||||||||||||||||||||||||||||| ||||||| |||| ||||||||||||||||||||| ||||||||    
T  32699027 attattctcaagtgctaaaattttagtctatatttctcaaatgctaaaatttcagtctactttgtatgtgttacagttc 32699105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 8 - 86
Target Start/End: Complemental strand, 43323545 - 43323467
Alignment:
Q  8 attattctcaagtgctaaaattttagtctatatttttcaaatgataaattttcagtctactttgtatgtgctacagttc 86  Q
    ||||||||||||||||||||||||||||||||||| ||||||| |||| |||||||||| |||||||||||||||||||    
T  43323545 attattctcaagtgctaaaattttagtctatatttctcaaatgctaaaatttcagtctattttgtatgtgctacagttc 43323467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 8 - 80
Target Start/End: Complemental strand, 5120551 - 5120479
Alignment:
Q  8 attattctcaagtgctaaaattttagtctatatttttcaaatgataaattttcagtctactttgtatgtgcta 80  Q
    |||||||| |||||||||||||| ||| | |||||||||  || |||| |||||||||||||||||| |||||    
T  5120551 attattcttaagtgctaaaatttcagtttctatttttcaggtgttaaaatttcagtctactttgtatatgcta 5120479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 147 - 179
Target Start/End: Original strand, 32699164 - 32699196
Alignment:
Q  147 aagatgtagcctaaaaaatatttatctggtagt 179  Q
    ||||||||||||||||||||||||||| |||||    
T  32699164 aagatgtagcctaaaaaatatttatctagtagt 32699196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 147 - 179
Target Start/End: Complemental strand, 43323402 - 43323370
Alignment:
Q  147 aagatgtagcctaaaaaatatttatctggtagt 179  Q
    |||||||||| ||||||||||||||||||||||    
T  43323402 aagatgtagcttaaaaaatatttatctggtagt 43323370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 63; Significance: 2e-27; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 8 - 86
Target Start/End: Original strand, 33443821 - 33443899
Alignment:
Q  8 attattctcaagtgctaaaattttagtctatatttttcaaatgataaattttcagtctactttgtatgtgctacagttc 86  Q
    ||||||||||||||||||||||||||||||||||| ||||||| |||| |||||||||| |||||||||||||||||||    
T  33443821 attattctcaagtgctaaaattttagtctatatttctcaaatgctaaaatttcagtctattttgtatgtgctacagttc 33443899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 8 - 86
Target Start/End: Complemental strand, 9467295 - 9467217
Alignment:
Q  8 attattctcaagtgctaaaattttagtctatatttttcaaatgataaattttcagtctactttgtatgtgctacagttc 86  Q
    ||||||||||||||||||||||||||||||||||| ||||||| |||| |||||||||| ||| |||||||||||||||    
T  9467295 attattctcaagtgctaaaattttagtctatatttctcaaatgctaaaatttcagtctattttatatgtgctacagttc 9467217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 147 - 179
Target Start/End: Original strand, 33443961 - 33443993
Alignment:
Q  147 aagatgtagcctaaaaaatatttatctggtagt 179  Q
    |||||||||||||||||||||||||||||||||    
T  33443961 aagatgtagcctaaaaaatatttatctggtagt 33443993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 147 - 179
Target Start/End: Complemental strand, 9467155 - 9467123
Alignment:
Q  147 aagatgtagcctaaaaaatatttatctggtagt 179  Q
    ||||||||||||||||||||||||| |||||||    
T  9467155 aagatgtagcctaaaaaatatttatttggtagt 9467123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 59; Significance: 5e-25; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 8 - 86
Target Start/End: Complemental strand, 56366709 - 56366631
Alignment:
Q  8 attattctcaagtgctaaaattttagtctatatttttcaaatgataaattttcagtctactttgtatgtgctacagttc 86  Q
    |||||| |||||||||||||||||| ||||||||| ||||||| |||| ||||||||||||||||||||||||||||||    
T  56366709 attattttcaagtgctaaaattttaatctatatttctcaaatgctaaaatttcagtctactttgtatgtgctacagttc 56366631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 147 - 179
Target Start/End: Complemental strand, 56366572 - 56366540
Alignment:
Q  147 aagatgtagcctaaaaaatatttatctggtagt 179  Q
    |||||||||||||||||||||||||||| ||||    
T  56366572 aagatgtagcctaaaaaatatttatctgatagt 56366540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 8 - 86
Target Start/End: Complemental strand, 4090606 - 4090529
Alignment:
Q  8 attattctcaagtgctaaaattttagtctatatttttcaaatgataaattttcagtctactttgtatgtgctacagttc 86  Q
    ||||||||||||||||||||||||||| ||||||| ||||||| |||| ||||||||||||||| |||||| |||||||    
T  4090606 attattctcaagtgctaaaattttagt-tatatttctcaaatgctaaaatttcagtctactttgcatgtgcgacagttc 4090529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 47; Significance: 7e-18; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 8 - 86
Target Start/End: Original strand, 9913262 - 9913340
Alignment:
Q  8 attattctcaagtgctaaaattttagtctatatttttcaaatgataaattttcagtctactttgtatgtgctacagttc 86  Q
    ||||||||||||||||||||||||||||||||| | | | ||| |||| ||||||| ||||||| ||||||||||||||    
T  9913262 attattctcaagtgctaaaattttagtctatatctatgagatgctaaaatttcagtttactttgcatgtgctacagttc 9913340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 86
Target Start/End: Complemental strand, 43672648 - 43672582
Alignment:
Q  20 tgctaaaattttagtctatatttttcaaatgataaattttcagtctactttgtatgtgctacagttc 86  Q
    ||||||||||| ||||| ||||||||   || |||| ||||||||||||||| ||||||||| ||||    
T  43672648 tgctaaaatttcagtctctatttttccggtgctaaaatttcagtctactttgcatgtgctactgttc 43672582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University