View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12977_high_42 (Length: 244)
Name: NF12977_high_42
Description: NF12977
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12977_high_42 |
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Alignment Details
Target: chr4 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 17 - 223
Target Start/End: Original strand, 974537 - 974743
Alignment:
| Q |
17 |
atttataattagctggaaaataaatatgtatccctcctggcacaaaagaaatacaaattaagaatataagacgtgataagtgatataaccagtaccagtt |
116 |
Q |
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| T |
974537 |
atttataattagctgaaaaataaatatgtatccctcctcgcgcaaaagaaatacaaattaagaatataagacgtgataagtgatataaccagtaccagtt |
974636 |
T |
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| Q |
117 |
tgtggatagattgccaaattttatgatatcggaattgaatgaacctttcaatcagacgttggccacaacgtagtaacaataagagctcaacaaactgaca |
216 |
Q |
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| T |
974637 |
tgtggatagattgccaaattttatgatatcggaattgaatgaacctttcaatcagacgtcggccacaacgtagtaacaataagagctcaacaaactgaca |
974736 |
T |
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| Q |
217 |
cagctac |
223 |
Q |
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||||||| |
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| T |
974737 |
cagctac |
974743 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 81; Significance: 3e-38; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 24 - 223
Target Start/End: Original strand, 8532915 - 8533111
Alignment:
| Q |
24 |
attagctggaaaataa--atatgtatccctcctggcacaaaagaaatacaaattaagaatataagacgtgataagtgatataaccagtaccagtttgtgg |
121 |
Q |
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|||||| ||||||||| ||||||||||||||| || |||| ||||||||||||||||| ||||| | |||||||||| || ||||||||||||||| |
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| T |
8532915 |
attagccggaaaataataatatgtatccctccttgctgaaaa--aatacaaattaagaatacaagacattataagtgata--actagtaccagtttgtgg |
8533010 |
T |
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| Q |
122 |
atagattgccaaattttatgatatcggaattgaatgaacctttcaatcagacgttggccacaacgtagtaacaataagagctcaacaaactgacacagct |
221 |
Q |
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| T |
8533011 |
atagcttgctgagttttatgatatacggattgaatgaacctt-caatcggacgtcgactacaacatagtaacaataagagctcaacaaactgacacagct |
8533109 |
T |
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