View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12977_high_43 (Length: 240)
Name: NF12977_high_43
Description: NF12977
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12977_high_43 |
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Alignment Details
Target: chr1 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 34297057 - 34296837
Alignment:
| Q |
1 |
tcttttagcttcaggcaaaccagcaccaacaaagcatgacaagtagaactcatcttccaaatttggtgccacatgttgccatttgttcactagctttgca |
100 |
Q |
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| T |
34297057 |
tcttttagcttcaggcaaaccagcaccaacaaagcatgacaagtagaactcatcttccaaatttggtgccacatgttgccatttgttcactagctttgca |
34296958 |
T |
|
| Q |
101 |
atatgattttttgtgcctgttctggatgcaatgaaactggttacaacttgtggcactttcaacaattgaattttccaggcatatacaattccccaaagcc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
34296957 |
atatgattttttgtgcctgttctggatgcaatgaaactggttacaacttgtggcactttcaacaattgaattttccaggcatatacaattccccaaagac |
34296858 |
T |
|
| Q |
201 |
cacctcctcctcctctaatag |
221 |
Q |
| |
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|||| ||||||||||| |||| |
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| T |
34296857 |
caccacctcctcctctgatag |
34296837 |
T |
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