View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12977_high_50 (Length: 207)
Name: NF12977_high_50
Description: NF12977
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12977_high_50 |
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Alignment Details
Target: chr1 (Bit Score: 70; Significance: 9e-32; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 34298222 - 34298291
Alignment:
| Q |
1 |
tttctgtttgacaagtagttcatgttaacctgttccttttgttttggcggagctaactaccaagttatac |
70 |
Q |
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| T |
34298222 |
tttctgtttgacaagtagttcatgttaacctgttccttttgttttggcggagctaactaccaagttatac |
34298291 |
T |
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Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 93 - 136
Target Start/End: Original strand, 34298343 - 34298386
Alignment:
| Q |
93 |
agatattgatccatgaacgtagtttaattgacaagacctatgaa |
136 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
34298343 |
agatattgatccatgaacgtagtttaattgacaaggcctatgaa |
34298386 |
T |
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