View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12977_low_1 (Length: 1102)
Name: NF12977_low_1
Description: NF12977
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12977_low_1 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 786; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 786; E-Value: 0
Query Start/End: Original strand, 291 - 1084
Target Start/End: Original strand, 5958680 - 5959473
Alignment:
| Q |
291 |
gaggtttgtatataatatatcaatttataattttgctttgtcacttgtttttacttaaaaaatgccatgttatatttttattggtgacgtatgttatacc |
390 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5958680 |
gaggtttgtatataatatatcaatttataattttgctttgtcatttgtttttacttaaaaaatgccatgttatatttttattggtgacgtatgttatacc |
5958779 |
T |
|
| Q |
391 |
actcataatgagatttaattcatgattgaattggtcttttcattcgcaattagtatcccaatttgataaccatgctaaaaaagtataatcatgctttgtt |
490 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5958780 |
actcataatgagatttaattcatgattgaattggtcttttcattcgcaattagtatcccaatttgataaccatgctaaaaaagtataatcatgctttgtt |
5958879 |
T |
|
| Q |
491 |
ttcatgttatttagggaagggaactttttcttttaggttaggtggtataataacacggttagaaatggtgaaagtttgttaatgtatgaggaagatggct |
590 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5958880 |
ttcatgttatttagggaagggaactttttcttttaggttaggtggtataataacacggttagaaatggtgaaagtttgttaatgtatgaggaagatggct |
5958979 |
T |
|
| Q |
591 |
gtgcctttatttggaacaatgttcattaaacgtgatattgtatgaagttgattcttttaatattgaatatgttacaatgagtttgaagagaagtggctta |
690 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5958980 |
gtgcctttatttggaacaatgttcattaaacgtgatattgtatgaagttgattcttttaatattgaatatgttacaatgagtttgaagagaagtggctta |
5959079 |
T |
|
| Q |
691 |
tattttaacgtttttgcaccgaatgtgaaggcaagtttgatatataatttagtatcattctgtcaatcaaatgtcaaagctgtttttcgtaactctttgt |
790 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5959080 |
tattttaacgtttttgcaccgaatgtgaaggcaagtttgatatatagtttagtatcattctgtcaatcaaatgtcaaagctgtttttcgtaactctttgt |
5959179 |
T |
|
| Q |
791 |
caaattgaggttcagaggcaattttgtgtgtaaggtaaaccaacattagtattcttacagtgcgtcttgacatgaggcaaaatcatttttgatacttcac |
890 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5959180 |
caaattgaggttcagaggcaattttgtgtgtaaggtaaaccaacattagtattcttacagtgcgtcttgacatgaggcaaaatcatttttgatacttcac |
5959279 |
T |
|
| Q |
891 |
attttggaaggtagagcaattttttacaatgttgaatgaattttgtttggaagataaattggaatcacttatgaagtgtaaatcacttataagtcacaca |
990 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5959280 |
attttggaaggtagagcaattttttacaatgttgaatgaattttgtttggaagataaattggaatcacttatgaagtgtaaatcacttataagtcacaca |
5959379 |
T |
|
| Q |
991 |
tgtagagtttgggaagctataaaattttgcttctcttaaatcaattctacccatcccaaagttgattttattgacacttttgaaatggtaatag |
1084 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5959380 |
tgtagagtttgggaagctataaaattttgcttctcttaaatcaattctacccatcccaaagttgattttattgacacttttgaaatggtaatag |
5959473 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 5958390 - 5958613
Alignment:
| Q |
1 |
cttaaaatgtgttcgtaagtgggagacattccgcactgtacaaaccgattttgttgggctgagttggactttataaatatgaactcaatatgaatctcta |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5958390 |
cttaaaatgtgttcgtaagtgggagacattccgcactgtacaaaccgattttgttgggctgagttggactttataaatatgaactcaatatgaatctcta |
5958489 |
T |
|
| Q |
101 |
gagtgtatctgtttctgacatgaatcccattttaaatctcaattcgtaagttaaatcttgattcatgatgacgaatcccgactcattctaatgagtcatt |
200 |
Q |
| |
|
||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5958490 |
gagtgtatctgtttctgacatgaattccatcttaaatctcaattcgtaagttaaatcttgattcatgatgacgaatcccgactcattctaatgagtcatt |
5958589 |
T |
|
| Q |
201 |
actcaaacttagtgtggtaagctc |
224 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
5958590 |
actcaaacttagtgtggtaagctc |
5958613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 291 - 353
Target Start/End: Original strand, 3727275 - 3727337
Alignment:
| Q |
291 |
gaggtttgtatataatatatcaatttataattttgctttgtcacttgtttttacttaaaaaat |
353 |
Q |
| |
|
|||||| |||||| |||||||| ||||||||| ||| |||||||||||||||||| |||||| |
|
|
| T |
3727275 |
gaggttcgtatatgatatatcagcttataatttagctatgtcacttgtttttactttaaaaat |
3727337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 299 - 351
Target Start/End: Complemental strand, 30284447 - 30284395
Alignment:
| Q |
299 |
tatataatatatcaatttataattttgctttgtcacttgtttttacttaaaaa |
351 |
Q |
| |
|
||||| |||||||||||| ||| |||| | ||||||||||||||||||||||| |
|
|
| T |
30284447 |
tatatgatatatcaatttgtaaatttgttatgtcacttgtttttacttaaaaa |
30284395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 299 - 351
Target Start/End: Original strand, 5270625 - 5270677
Alignment:
| Q |
299 |
tatataatatatcaatttataattttgctttgtcacttgtttttacttaaaaa |
351 |
Q |
| |
|
||||| ||||| ||| |||||||| |||| ||||||||||||||||||||||| |
|
|
| T |
5270625 |
tatatgatataccaacttataattctgctatgtcacttgtttttacttaaaaa |
5270677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 305 - 351
Target Start/End: Original strand, 30603469 - 30603515
Alignment:
| Q |
305 |
atatatcaatttataattttgctttgtcacttgtttttacttaaaaa |
351 |
Q |
| |
|
||||||||| ||||| ||||||| ||||| ||||||||||||||||| |
|
|
| T |
30603469 |
atatatcaacttatagttttgctatgtcatttgtttttacttaaaaa |
30603515 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University