View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12977_low_10 (Length: 513)
Name: NF12977_low_10
Description: NF12977
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12977_low_10 |
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Alignment Details
Target: chr6 (Bit Score: 421; Significance: 0; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 421; E-Value: 0
Query Start/End: Original strand, 1 - 497
Target Start/End: Complemental strand, 34820167 - 34819671
Alignment:
| Q |
1 |
ctttaaagaagaaagggaagagtgataaaggcgagacaaacaagaagaatgatgatagtatttgtacaaagccaccagttgagaaaagagttagctgcca |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
34820167 |
ctttaaagaagaaagggaagagtgataaaggcgagacaaccaagaagaatgatggtagtatttgtacaaagccaccagctgagaaaagagttagctgcca |
34820068 |
T |
|
| Q |
101 |
agaacataaaggaacgagaataaatgtgtttagtgcaaaagcaataagaagatctaagtctgaatcagaaatctttgctggaagttttattgacgagagt |
200 |
Q |
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|||||||||||||| |||| ||||||||||||||||||||||||| |||||||| |||||||||||||||||||| ||||| |||||| ||||||||||| |
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| T |
34820067 |
agaacataaaggaatgagactaaatgtgtttagtgcaaaagcaattagaagatccaagtctgaatcagaaatcttggctgggagttttgttgacgagagt |
34819968 |
T |
|
| Q |
201 |
atcaccaaaaatgatgttggtatgtatgaggtggttttgcaagctaagattgaccatcaactcgctgaggcatgtcctttaaagaagaaagggaagagtt |
300 |
Q |
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|
|||||||||||||||| ||||| ||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
34819967 |
atcaccaaaaatgatgatggtacgtatgcggtggttttgcaagctaagattgaccatcaactcgttgaggcatgtcctttaaagaagaaagggaagagtg |
34819868 |
T |
|
| Q |
301 |
atgaaggcgaggccaacaagaagaaggtcgagtgcgttcttgaggttgagatcggcggctccttgtggaacaggaacttcgatcgtgctggcttcgtgaa |
400 |
Q |
| |
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|| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34819867 |
ataaaggcgaggccaacaagaagaatgtcgagtgcgttcttgaggttgagatcggcggctccttgtggaacaggaacttcgatcgtgctggcttcgtgaa |
34819768 |
T |
|
| Q |
401 |
ggatcatttcaacctttatgaagattttgacgtaacaaggaagtctaatcactccaatatgtttcatgatgctagtgtttcttgtttgcgctctgtg |
497 |
Q |
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|||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
34819767 |
ggatcatttcaacctttatgaagattttgaggcaacaaggaagtctaatcactccaatatgtttcatgatgctagtgtttcttgtttgcgctctgtg |
34819671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 183 - 325
Target Start/End: Complemental strand, 34820261 - 34820119
Alignment:
| Q |
183 |
agttttattgacgagagtatcaccaaaaatgatgttggtatgtatgaggtggttttgcaagctaagattgaccatcaactcgctgaggcatgtcctttaa |
282 |
Q |
| |
|
|||||| |||||||||| ||||| |||||| ||||||||| || ||||| |||| ||||| || |||||||||||||||||||||| | |||||||| |
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|
| T |
34820261 |
agttttgttgacgagagcatcacaaaaaataatgttggtacgtcataggtgactttggaagctgaggttgaccatcaactcgctgaggcgtctcctttaa |
34820162 |
T |
|
| Q |
283 |
agaagaaagggaagagttatgaaggcgaggccaacaagaagaa |
325 |
Q |
| |
|
||||||||||||||||| || |||||||| | | ||||||||| |
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|
| T |
34820161 |
agaagaaagggaagagtgataaaggcgagacaaccaagaagaa |
34820119 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 183 - 265
Target Start/End: Complemental strand, 34820612 - 34820530
Alignment:
| Q |
183 |
agttttattgacgagagtatcaccaaaaatgatgttggtatgtatgaggtggttttgcaagctaagattgaccatcaactcgc |
265 |
Q |
| |
|
|||||| ||||||| |||||||| |||| |||||| ||||||| |||||||||||| ||| | || |||||||||| ||||| |
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|
| T |
34820612 |
agttttgttgacgaaagtatcactaaaattgatgtcggtatgtcggaggtggttttggaagttgagcttgaccatcagctcgc |
34820530 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 184 - 265
Target Start/End: Complemental strand, 34820377 - 34820296
Alignment:
| Q |
184 |
gttttattgacgagagtatcaccaaaaatgatgttggtatgtatgaggtggttttgcaagctaagattgaccatcaactcgc |
265 |
Q |
| |
|
||||| |||||||||||||||| ||||||||| |||||| || ||||||| |||| ||| | | |||||||||||||||| |
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|
| T |
34820377 |
gttttgttgacgagagtatcacaaaaaatgattttggtacgtcagaggtggctttggaagttgtggttgaccatcaactcgc |
34820296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 183 - 259
Target Start/End: Complemental strand, 34820729 - 34820653
Alignment:
| Q |
183 |
agttttattgacgagagtatcaccaaaaatgatgttggtatgtatgaggtggttttgcaagctaagattgaccatca |
259 |
Q |
| |
|
|||||| |||||||||||||||| ||||||||| |||||| || ||||||| |||| ||||| || || ||||||| |
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|
| T |
34820729 |
agttttgttgacgagagtatcacaaaaaatgatattggtacgtcagaggtggctttggaagctgaggttaaccatca |
34820653 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 59 - 123
Target Start/End: Complemental strand, 34835165 - 34835101
Alignment:
| Q |
59 |
tatttgtacaaagccaccagttgagaaaagagttagctgccaagaacataaaggaacgagaataa |
123 |
Q |
| |
|
||||||||||||| | || || |||||||||||||| || || ||||||||||||| |||||||| |
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|
| T |
34835165 |
tatttgtacaaagacgccggtcgagaaaagagttaggtgtcatgaacataaaggaatgagaataa |
34835101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 183 - 222
Target Start/End: Complemental strand, 34820846 - 34820807
Alignment:
| Q |
183 |
agttttattgacgagagtatcaccaaaaatgatgttggta |
222 |
Q |
| |
|
|||||| |||||||||||||||| |||||||||||||||| |
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|
| T |
34820846 |
agttttgttgacgagagtatcacaaaaaatgatgttggta |
34820807 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 183 - 265
Target Start/End: Complemental strand, 34820495 - 34820413
Alignment:
| Q |
183 |
agttttattgacgagagtatcaccaaaaatgatgttggtatgtatgaggtggttttgcaagctaagattgaccatcaactcgc |
265 |
Q |
| |
|
|||||| ||||||||||| ||| |||||||||||||||| | |||||||||||| ||| | || |||||||||| ||||| |
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| T |
34820495 |
agttttgttgacgagagtgtcataaaaaatgatgttggtacatcagaggtggttttgaaagttgaggttgaccatcagctcgc |
34820413 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 388 - 451
Target Start/End: Complemental strand, 22080743 - 22080680
Alignment:
| Q |
388 |
ctggcttcgtgaaggatcatttcaacctttatgaagattttgacgtaacaaggaagtctaatca |
451 |
Q |
| |
|
||||||||||||| ||||||||||||||| ||| |||||||| | | | |||||||||||||| |
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|
| T |
22080743 |
ctggcttcgtgaaagatcatttcaaccttcctgaggattttgaggcagcgaggaagtctaatca |
22080680 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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