View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12977_low_11 (Length: 507)
Name: NF12977_low_11
Description: NF12977
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12977_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 422; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 422; E-Value: 0
Query Start/End: Original strand, 18 - 487
Target Start/End: Original strand, 25037936 - 25038405
Alignment:
| Q |
18 |
atgaattatcttcttttcatggaatagaaaatcaaaggaaggcatgtgagaaattgatttttctatcaatggattaaggttatttcaattcttcataagg |
117 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
25037936 |
atgaattatcttctttccatggaatagaaaatcaaaggaaggcatgtgagaaattgatttttctatcaatggattaaggttatttcagttcttcataagg |
25038035 |
T |
|
| Q |
118 |
agttgtgatcaaggtgttcttacttgttaaattgacatgagtatccttgaaatatccaggtgtgcctgtgtcattatttgattgtggtatattggcagca |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
25038036 |
agttgtgatcaaggtgttcttacttgttaaattgacatgagtatccttgaaatatccaggtgtgcctgtgtcattatttgattgtggtatattagcagca |
25038135 |
T |
|
| Q |
218 |
taattggaggtgtagtaattgattccaataaaatcaaatgagccaataagaatcttagattgctctttggtgaactttggtaaacgatttcccacataag |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
25038136 |
taattggaggtgtagtaattgattccaataaaatcaaatgagccaataagaatcttagattgctctctggtgaactttggtaaacgatttcccacataag |
25038235 |
T |
|
| Q |
318 |
acaccatgcttgatggatacgctcctgttgtcagtggatgcataaacctacaaacaagtcttgtataatataaacatgcatataaataagattttaaatt |
417 |
Q |
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|||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
25038236 |
acaccatgcttgatggatactctcctgttgtcagtggctgcataaacctacaaacaagtcttgtataatataaacatgcatataaataagattttagatt |
25038335 |
T |
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| Q |
418 |
tcgggcacaagtatgtcgtgatcgatgattttgcgaagaattgtgaataaatgcaacattataccatcca |
487 |
Q |
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|||| |||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| |
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| T |
25038336 |
atgggcgcaagtatgtcgtgatcgatgattttgcgaacaattgggaataaatgcaacattataccatcca |
25038405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 104 - 376
Target Start/End: Original strand, 25016917 - 25017189
Alignment:
| Q |
104 |
aattcttcataaggagttgtgatcaaggtgttcttacttgttaaattgacatgagtatccttgaaatatccaggtgtgcctgtgtcattatttgattgtg |
203 |
Q |
| |
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|||||||||||||||||||| | |||||| ||||||||||| || ||||||||||||||||||| ||| | || | |||||| |||||||||||| |
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| T |
25016917 |
aattcttcataaggagttgtaaacaaggtattcttacttgtaaatttgacatgagtatccttgagatagcttggatcacttgtgtcgctatttgattgtg |
25017016 |
T |
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| Q |
204 |
gtatattggcagcataattggaggtgtagtaattgattccaataaaatcaaatgagccaataagaatcttagattgctctttggtgaactttggtaaacg |
303 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
25017017 |
gtatattggcagcatatttggaggtgtagtaattgattccaataaaatcaaatgagccaataagcatcttagattgctctttggtgaactttggtaaacg |
25017116 |
T |
|
| Q |
304 |
atttcccacataagacaccatgcttgatggatacgctcctgttgtcagtggatgcataaacctacaaacaagt |
376 |
Q |
| |
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||||||| || |||||||||||||| |||||||| ||||||| |||| ||| ||||||||||| ||||||||| |
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| T |
25017117 |
atttcccgcaaaagacaccatgcttaatggatactctcctgtggtcaatggctgcataaacctgcaaacaagt |
25017189 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 208 - 373
Target Start/End: Original strand, 4623933 - 4624098
Alignment:
| Q |
208 |
attggcagcataattggaggtgtagtaattgattccaataaaatcaaatgagccaataagaatcttagattgctctttggtgaactttggtaaacgattt |
307 |
Q |
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|||||||||||| || |||||||||||||||||||||||||||| |||| ||||||||| |||||||||||||| ||||||||||||| || | |
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| T |
4623933 |
attggcagcatacatgctggtgtagtaattgattccaataaaatcatatgacccaataagactcttagattgctctgcagtgaactttggtagcttatct |
4624032 |
T |
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| Q |
308 |
cccacataagacaccatgcttgatggatacgctcctgttgtcagtggatgcataaacctacaaaca |
373 |
Q |
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|||||||||||||||| ||||| ||||||| |||||||||||||||| || |||||||| |||||| |
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| T |
4624033 |
cccacataagacaccaagcttgctggatactctcctgttgtcagtggctgtataaacctgcaaaca |
4624098 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 208 - 373
Target Start/End: Original strand, 4599605 - 4599767
Alignment:
| Q |
208 |
attggcagcataattggaggtgtagtaattgattccaataaaatcaaatgagccaataagaatcttagattgctctttggtgaactttggtaaacgattt |
307 |
Q |
| |
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|||||||||||| ||| |||||||||||||||||||||||||||| |||| ||||||||| | ||||||||||||| |||||||||||||| || | |
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| T |
4599605 |
attggcagcatacatggtggtgtagtaattgattccaataaaatcatatgacccaataagacttttagattgctcttcagtgaactttggtaa---atct |
4599701 |
T |
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| Q |
308 |
cccacataagacaccatgcttgatggatacgctcctgttgtcagtggatgcataaacctacaaaca |
373 |
Q |
| |
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||| ||||||||||| ||| ||||||| |||| ||||||||||| || |||||||| |||||| |
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| T |
4599702 |
ttcacgaaagacaccatgtttgctggatactctccggttgtcagtggctgtataaacctgcaaaca |
4599767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 61; Significance: 6e-26; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 207 - 373
Target Start/End: Complemental strand, 18804875 - 18804712
Alignment:
| Q |
207 |
tattggcagcataattggaggtgtagtaattgattccaataaaatcaaatgagccaataagaatcttagattgctctttggtgaactttggtaaacgatt |
306 |
Q |
| |
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||||| ||||||| |||||||||||||||| |||||||||||||| |||| ||||||||| ||| | |||||||||| |||||||||||||| | |
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| T |
18804875 |
tattgacagcatacgtggaggtgtagtaattaattccaataaaatcgtatgacccaataagactctcatattgctctttagtgaactttggtaa---tgt |
18804779 |
T |
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| Q |
307 |
tcccacataagacaccatgcttgatggatacgctcctgttgtcagtggatgcataaacctacaaaca |
373 |
Q |
| |
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| ||| || |||||||||||||| ||| ||| |||||||||||||||| || | |||||| |||||| |
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| T |
18804778 |
ttccaaattagacaccatgcttgctgggtactctcctgttgtcagtggttgtaaaaacctgcaaaca |
18804712 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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