View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12977_low_13 (Length: 491)
Name: NF12977_low_13
Description: NF12977
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12977_low_13 |
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Alignment Details
Target: chr8 (Bit Score: 315; Significance: 1e-177; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 1 - 350
Target Start/End: Complemental strand, 36383490 - 36383130
Alignment:
| Q |
1 |
atgaaaatcttggcagagatgatggtctgcaagaatttgatcgcatagcttttgccattggagatacttcagaggggagctctggctcaaaaaatttata |
100 |
Q |
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| T |
36383490 |
atgaaaatcttggcagagatgatggtctgcaagaatttgatcgcatagcttttgccattggagatacttcagaggggagctctggctcaaaaaatttata |
36383391 |
T |
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| Q |
101 |
gacatcttcatcctgaaacagtttgccataataattataaaaggct-----------tagctatcacatgtcattttgttctgattttcatcaagctaat |
189 |
Q |
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| T |
36383390 |
gacatcttcatcctgaaacagtttgccataataattataaaaggctatgcaaaggcttagctatcacatgtcattttgttctgattttgatcaagctaat |
36383291 |
T |
|
| Q |
190 |
attactattaaagaatgacactttaatgtttacagccaatatttaacagatatagtagtaggtgttgtgtgattaggaggtaacaggttcaagttatgga |
289 |
Q |
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| T |
36383290 |
attactattaaagaatgacactttaatgtttacagccaatatttaacagatatagtagtaggtgttgtgtgattaggaggtaacaagttcaagttatgga |
36383191 |
T |
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| Q |
290 |
attaaacccttgcaaatacaaggtaaaactgcctataatagacccttatagcactagattg |
350 |
Q |
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| T |
36383190 |
attaaacccttgcaaatacaaggtaaaactgcctataatagacccttatagcactagattg |
36383130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 413 - 478
Target Start/End: Complemental strand, 36383031 - 36382966
Alignment:
| Q |
413 |
caaatcaaaacctttgctagaaagtggccaatgcataggacgtaatcaattggttccttcatgcct |
478 |
Q |
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| T |
36383031 |
caaatcaaaacctttgctagaaagtggccaatgcataggacgtaatcaattggttccttcatgcct |
36382966 |
T |
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