View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12977_low_14 (Length: 488)
Name: NF12977_low_14
Description: NF12977
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12977_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 244; Significance: 1e-135; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 190 - 480
Target Start/End: Complemental strand, 45058371 - 45058080
Alignment:
| Q |
190 |
gcataaatactggagtttgggggaggaagaaacgtggaatgtaaggtaacttggtttgtttgttgtttatagcctaaagccc-actttcttcaacttttt |
288 |
Q |
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| T |
45058371 |
gcataaatactggagtttgggggaggaagaaacgtggaatgtaaggtaacttggtttgtttgttgtttatagcctaaagccccactttcctcaacttttt |
45058272 |
T |
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| Q |
289 |
gatcacattataattttatcatcttaccctaaattgttctacttctgactcaacccaccatgcccaaattccatgcatacaattttattatattatcatc |
388 |
Q |
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| T |
45058271 |
gatcacattataattttatcatcttaccctaaattgttctacttctgactcaacccaccatgcccaaattccatgcatataattttattatattatcatc |
45058172 |
T |
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| Q |
389 |
aaatcatttatcataaggtcgttacttttcctccnnnnnnnntataagtcgttacttttaccatctactattagtcctctattgcctatgct |
480 |
Q |
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| T |
45058171 |
aaatcatttatcataaggtcgttacttttcctccaaaaaaaataaaagtcgttacttttaccatctactattagtcctctattgcccatgct |
45058080 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 18 - 73
Target Start/End: Complemental strand, 45058542 - 45058487
Alignment:
| Q |
18 |
aaccaaaagggtcaacctctaaaaccttgttcaaaacctcaaatcaaaggttttag |
73 |
Q |
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| T |
45058542 |
aaccaaaagggtcaacctctaaaaccttgttcaaaacctcaaatcaaaggttttag |
45058487 |
T |
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