View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12977_low_15 (Length: 476)
Name: NF12977_low_15
Description: NF12977
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12977_low_15 |
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Alignment Details
Target: chr5 (Bit Score: 261; Significance: 1e-145; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 17 - 466
Target Start/End: Original strand, 24234808 - 24235263
Alignment:
| Q |
17 |
ataaacatatatacgtggt-tttaaaaaattgcatgaatcttactcatcttctggagttctgtcccagatcgaggactagtgaactagttatatccaaac |
115 |
Q |
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| T |
24234808 |
ataaacatatatacgtggactttaaaaaattacatgaatcttactcatcttctggagttctgtcccaaatcgaggactagtgaactagttatatccaagc |
24234907 |
T |
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| Q |
116 |
atttcctagtagatgtagacatgatcctaaaacataagaggctatatttgcgcaaaaccaagagacacgaacttggtaactttggacatacatggctcaa |
215 |
Q |
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| T |
24234908 |
atttcttcgtagatgtagacatgatcctaaaatacaagaggctatatttgcgcaaaactaagagacacgaacttggtaactttggacatacatggctcaa |
24235007 |
T |
|
| Q |
216 |
ttgttgagatgcataagagctaaacaaaggggcccttgtcgatcatgtatataaattatggctattattttttgcatcct-atgagtttgtcgtg-tttt |
313 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| | | | |||||||| ||||| | |
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| T |
24235008 |
ttgttgaaatgcataagagctaaacaaaggggcccttgtcgatcatgtatataaattatggctattgcttttcaaaacttaatgagtttctcgtgcgctc |
24235107 |
T |
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| Q |
314 |
tattcagattctaaaatcataaaaa-ttttaacgtgtttttgaggttttatgaagtgtttatgcagttcagattatataattcgaactg--nnnnnnnnt |
410 |
Q |
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| T |
24235108 |
tattcggattctaaaatcctaaaaagttttaacgtgtttctgaggttttatgaagtgtttatgcagttcggattttataatccgaactgaaaaaaaaata |
24235207 |
T |
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| Q |
411 |
catagattataggtcatatcaactgcaaagggttctaaacactcacatcacctttg |
466 |
Q |
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| T |
24235208 |
cataaattatagatcatatcaactgcaaagggttcaaaacactcacgtcacctttg |
24235263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 314 - 394
Target Start/End: Original strand, 333421 - 333502
Alignment:
| Q |
314 |
tattcagattctaaaatcataaaaattttaacgtgtttttgaggttt-tatgaagtgtttatgcagttcagattatataatt |
394 |
Q |
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| T |
333421 |
tattcggattttaaaatcgaaaatattttaacgtgttttgggagtttctatgaggtgtttatgctgttcagattatataatt |
333502 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 314 - 401
Target Start/End: Complemental strand, 13169796 - 13169708
Alignment:
| Q |
314 |
tattcagattctaaaatcataaaaattttaacgtgtttttgagg-ttttatgaagtgtttatgcagttcagattatataattcgaactg |
401 |
Q |
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| T |
13169796 |
tattcagattcaaaaatctaaaatattttgacgtattttggaggtttttatggagtgttgatgtcgttcggattatataactcgaactg |
13169708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 313 - 399
Target Start/End: Complemental strand, 16377966 - 16377879
Alignment:
| Q |
313 |
ttattcagattctaaaatcataaaa-attttaacgtgtttttgagg-ttttatgaagtgtttatgcagttcagattatataattcgaac |
399 |
Q |
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| T |
16377966 |
ttatttagattttaaaat-ataaaatatttttacgtgtttttgaggtttttatgaggtgtttatgcggtttaaattatataatccgaac |
16377879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 314 - 386
Target Start/End: Original strand, 14338933 - 14339004
Alignment:
| Q |
314 |
tattcagattctaaaatcataaaaattttaacgtgtttttgaggttttatgaagtgtttatgcagttcagatt |
386 |
Q |
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| T |
14338933 |
tattcagattcttaaatccaaaatatttcaacgtgtttt-gaggttttataaggtatttatgcagttcagatt |
14339004 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 320 - 393
Target Start/End: Original strand, 37267751 - 37267825
Alignment:
| Q |
320 |
gattctaaaatcataaaaattttaacgtgtttt-tgaggttttatgaagtgtttatgcagttcagattatataat |
393 |
Q |
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| T |
37267751 |
gattctaaaatccgaaatattttaacgtgttttgggaggttttatgagatttttatacagttcagattctataat |
37267825 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 321 - 381
Target Start/End: Original strand, 3664230 - 3664291
Alignment:
| Q |
321 |
attctaaaatcataaaaattttaacgtgtttttg-aggttttatgaagtgtttatgcagttc |
381 |
Q |
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| T |
3664230 |
attctaaaatccgaaatattttaacgtgtttttgtaggttttatgagatttttatgcagttc |
3664291 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 314 - 401
Target Start/End: Complemental strand, 782453 - 782365
Alignment:
| Q |
314 |
tattcagattctaaaatcataaaaattttaacgtgtttttg-aggttttatgaagtgtttatgcagttcagattatataattcgaactg |
401 |
Q |
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||||| |||||||||||| ||| |||| ||| | |||||| || |||||||| || |||||||||||| |||| || ||||||||||| |
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| T |
782453 |
tattcggattctaaaatccgaaatatttcaacttttttttggagattttatgaggtttttatgcagttcggattctaaaattcgaactg |
782365 |
T |
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