View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12977_low_18 (Length: 453)
Name: NF12977_low_18
Description: NF12977
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12977_low_18 |
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Alignment Details
Target: chr1 (Bit Score: 223; Significance: 1e-122; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 18 - 277
Target Start/End: Complemental strand, 16107607 - 16107348
Alignment:
| Q |
18 |
actatggacaaacggttacaacctcacttctctcatccacgtcaccattttacctaagagttgcccctttttccctcttttacccctcttagagtaaact |
117 |
Q |
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| T |
16107607 |
actatggacaaacggttacaacctcacttctctaatccacgtcaccattttacctaagagtcacccctttttccctcttttacccctcctagagtaaact |
16107508 |
T |
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| Q |
118 |
ctccacgctatgggcttatttggatccaatatgaaccaagggcccaagctgatcagaaaaggatcagcatatattatgccttgcatagtcacttcactat |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16107507 |
ctccacgctatgggcttatttggatccaatatgaaccaagggcccaagctgatcagaaaaggatcagcatatattatgccttgcatagtcacttcactat |
16107408 |
T |
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| Q |
218 |
gactacnnnnnnnatggtctcattctttcacgatggctagttggctactcacttagaata |
277 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16107407 |
gactactttttttatggtctcattctttcacgatggctagttggctactcacttagaata |
16107348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 277 - 453
Target Start/End: Complemental strand, 16107255 - 16107055
Alignment:
| Q |
277 |
aaacaagacttatgactagtattctctttgttttgggagtattata-------------------gagaacttttcaaaaccctccaaagtttcccaann |
357 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| |
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| T |
16107255 |
aaacaagacttatgactagtattctctttgttttgggagtattataaaaatatggaaaggatttagagaatttttcaaaaccctccaaagtttcccaatt |
16107156 |
T |
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| Q |
358 |
nnnnnnaacccccaaaattaaagaaaaataaagacatgcaaggtgggggttgtccc-----ctcctctcttttcctttcccctcccttcctcttgtaact |
452 |
Q |
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| T |
16107155 |
ttttttaacccccaaaattaaagaaaaataaagacatgcaaggtgggggttgtcccctcccctcctctcttttcctctgccctcccttcctcttgtaact |
16107056 |
T |
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| Q |
453 |
t |
453 |
Q |
| |
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| |
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| T |
16107055 |
t |
16107055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 189; Significance: 1e-102; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 18 - 277
Target Start/End: Original strand, 23945363 - 23945619
Alignment:
| Q |
18 |
actatggacaaacggttacaacctcacttctctcatccacgtcaccattttacctaagagttgcccctttttccctcttttacccctcttagagtaaact |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||| ||||||||||| |
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| T |
23945363 |
actatggacaaacggttacaacctcacttctctcatccacgtcatcattttacctaagagtcacccctttttccctcttttacccctcctagagtaaact |
23945462 |
T |
|
| Q |
118 |
ctccacgctatgggcttatttggatccaatatgaaccaagggcccaagctgatcagaaaaggatcagcatatattatgccttgcatagtcacttcactat |
217 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| || ||||||||||| |||||||||||||||||| |
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| T |
23945463 |
ctccacgctatgggcttatttggatccaatatga---aagggccctagctgatcagaaaaggatcaacaaatattatgcctagcatagtcacttcactat |
23945559 |
T |
|
| Q |
218 |
gactacnnnnnnnatggtctcattctttcacgatggctagttggctactcacttagaata |
277 |
Q |
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|||||| |||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
23945560 |
gactactttttttatggtctcattctttcacgatgactagttggctactcacttagaata |
23945619 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 277 - 453
Target Start/End: Original strand, 23945711 - 23945886
Alignment:
| Q |
277 |
aaacaagacttatgactagtattctctttgttttgggagtattatagagaacttttcaaaaccctccaaagtttcccaannnnnnnnaacccccaaaatt |
376 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||| || ||||||||||||| |
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| T |
23945711 |
aaacaagacttatgactagtattctctttgttttgggagtattatagagaatttttcaaaacattccaaagtttcc-aattttttttaacccccaaaatt |
23945809 |
T |
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| Q |
377 |
aaagaaaaataaagacatgcaaggtgggggttgtcccctcctctcttttcctttcccctcccttcctcttgtaactt |
453 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23945810 |
aaagaaaaataaagacatgcaaggtgggggttgtcccctcctctcttttcctttcccctcccttcctcttgtaactt |
23945886 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 364 - 453
Target Start/End: Original strand, 56239390 - 56239479
Alignment:
| Q |
364 |
aacccccaaaattaaagaaaaataaagacatgcaaggtgggggttgtcccctcctctcttttcctttcccctcccttcctcttgtaactt |
453 |
Q |
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|||||||||| ||||||||||||||| |||| ||||||||||| |||||||||| ||| |||||||||||||||||||||| | |||||| |
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| T |
56239390 |
aacccccaaagttaaagaaaaataaaaacatacaaggtgggggctgtcccctccactcctttcctttcccctcccttcctcctataactt |
56239479 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 82 - 173
Target Start/End: Original strand, 56238935 - 56239022
Alignment:
| Q |
82 |
ccctttttccctcttttacccctcttagagtaaactctccacgctatgggcttatttggatccaatatgaaccaagggcccaagctgatcag |
173 |
Q |
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| T |
56238935 |
ccctttttccttcttttacccctcctagagtaaactctccgtgctatgggcttatttggatcaaatatg----aagggcccaagctgatcag |
56239022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 277 - 322
Target Start/End: Original strand, 56239278 - 56239323
Alignment:
| Q |
277 |
aaacaagacttatgactagtattctctttgttttgggagtattata |
322 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56239278 |
aaacaagacttatgactagtattctctttgttttgggagtattata |
56239323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 174 - 256
Target Start/End: Original strand, 56239091 - 56239174
Alignment:
| Q |
174 |
aaaaggatcagcatatattatgccttg-catagtcacttcactatgactacnnnnnnnatggtctcattctttcacgatggcta |
256 |
Q |
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|||||||| ||||||||||||| |||| |||||||||||||||||| |||| |||||||||||||||||| ||||||| |
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| T |
56239091 |
aaaaggattagcatatattatgtcttggcatagtcacttcactatggctactttttttatggtctcattctttcactatggcta |
56239174 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 285 - 322
Target Start/End: Complemental strand, 16626598 - 16626561
Alignment:
| Q |
285 |
cttatgactagtattctctttgttttgggagtattata |
322 |
Q |
| |
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|||||||| || |||||||||||||||||||||||||| |
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| T |
16626598 |
cttatgacaagcattctctttgttttgggagtattata |
16626561 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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