View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12977_low_19 (Length: 434)
Name: NF12977_low_19
Description: NF12977
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12977_low_19 |
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Alignment Details
Target: chr2 (Bit Score: 362; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 18 - 421
Target Start/End: Original strand, 44268167 - 44268570
Alignment:
| Q |
18 |
agccattcaacaaaattacaaagtttattctttaattttannnnnnnaaggaaatgagaaactcatttatatatggtccatggagactnnnnnnnttgat |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
44268167 |
agccattcaacaaaattacaaagtttattctttaattttatttttttaaggaaatgagaaactcatttatatatggtccatggagactaaaaaaattgat |
44268266 |
T |
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| Q |
118 |
tataacatgacttgaaaaaagtgatgagtaaacttattctatagccagataattacctacaacaaattgttaaaccaaacgcttctttcatgagtggagc |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44268267 |
tataacatgacttgaaaaaagtgatgagtaaacttattctatagccagataattacctacaacaaattgttaaaccaaacgcttctttcatgagtggagc |
44268366 |
T |
|
| Q |
218 |
ttattctttctatctagcaatcctatctatagaattgcaatctaaaattaattattgtgagatgttcaagattcagatggactaattgagaagtcatctg |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44268367 |
ttattctttctatctagcaatcctatctatagaattgcaatctaaaattaattattgtgagatgttcaagattcagatggactaattgagaagtcatctg |
44268466 |
T |
|
| Q |
318 |
cttctgtatataaaggtgcaacggaaccatcttcatcttcattctcagtcaacactggtaccttaacagcagtttctctttccaactctttctcaagttc |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44268467 |
cttctgtatataaaggtgcaacggaaccatcttcatcttcattctcagtcaacactggtaccttaacagcagtttctctttccaactctttctcaagttc |
44268566 |
T |
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| Q |
418 |
ttct |
421 |
Q |
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|||| |
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| T |
44268567 |
ttct |
44268570 |
T |
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