View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12977_low_21 (Length: 422)
Name: NF12977_low_21
Description: NF12977
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12977_low_21 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 55 - 408
Target Start/End: Complemental strand, 34506595 - 34506247
Alignment:
| Q |
55 |
ccaagtaaaacattaaccactaagaataataagcgttgattcgcatttatttattacttaacttaatatgcattttgtagtcatgatcctctctatatat |
154 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
34506595 |
ccaagtaaaacattaaccactaagaataataagcgttgattcgcatttatttattacttaa-----tatgcattttgtagtcatgatcctctctatatat |
34506501 |
T |
|
| Q |
155 |
aatatcgatcgtatgcctatgatttatctatatctactacaattgtcatatatctaatcagaacatgaagagtccaagattcgaaaattcctttgtaatt |
254 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34506500 |
aatatcgatcgtatgcctatgatttatctatatctactacaattgtcatatatctaatcagaacatgaagagtccaagattcgaaaattcctttgtaatt |
34506401 |
T |
|
| Q |
255 |
ttcattgtgcacagtttttatgtgttgttcatatacctgttctatgtcaatgcttcagtagttttttatattccttatttatgtctaagaaaataaacgt |
354 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
34506400 |
ttcattgtgcatagtttttatgtgttgttcatatacctgttctatgtcaatgcttcagtagttttttatattccttacttatgtctaagaaaataaacgt |
34506301 |
T |
|
| Q |
355 |
tacatgtagttatttttattttctgtgtccatagacttatattatcattgtttt |
408 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
34506300 |
tacatgtagttatttttattttctgtgtccataaacttatattatcattgtttt |
34506247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 67; Significance: 1e-29; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 219 - 379
Target Start/End: Complemental strand, 45079785 - 45079628
Alignment:
| Q |
219 |
atgaagagtccaagattcgaaaattcctttgtaattttcattgtgcacagtttttatgtgttgttcatatacctgttctatgtcaatgcttcagtagttt |
318 |
Q |
| |
|
||||||||| |||||||||||||||||| |||||||||| || |||| ||||||||||| |||||||||| ||||||||| ||||| ||| ||||| |
|
|
| T |
45079785 |
atgaagagtgcaagattcgaaaattcctatgtaattttctttctgcatagtttttatgtattgttcatat---tgttctatgacaatgtctcaaaagttt |
45079689 |
T |
|
| Q |
319 |
tttatattccttatttatgtctaagaaaataaacgttacatgtagttatttttattttctg |
379 |
Q |
| |
|
||||| || | ||||||| || ||||| ||||||||||||||| |||||| ||||||||| |
|
|
| T |
45079688 |
tttatgttgcctatttatatccaagaatataaacgttacatgtgattatttatattttctg |
45079628 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 334 - 389
Target Start/End: Complemental strand, 45068913 - 45068858
Alignment:
| Q |
334 |
tatgtctaagaaaataaacgttacatgtagttatttttattttctgtgtccataga |
389 |
Q |
| |
|
|||||||||||||||||| |||||| || ||| |||||||||||||| | |||||| |
|
|
| T |
45068913 |
tatgtctaagaaaataaatgttacaggtggttgtttttattttctgtatgcataga |
45068858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 211 - 265
Target Start/End: Complemental strand, 45068979 - 45068925
Alignment:
| Q |
211 |
atcagaacatgaagagtccaagattcgaaaattcctttgtaattttcattgtgca |
265 |
Q |
| |
|
||||||||||||||||| ||| ||||| |||||||| ||||||| || ||||||| |
|
|
| T |
45068979 |
atcagaacatgaagagtgcaatattcggaaattcctatgtaattctctttgtgca |
45068925 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 117 - 155
Target Start/End: Complemental strand, 45079875 - 45079837
Alignment:
| Q |
117 |
ttaatatgcattttgtagtcatgatcctctctatatata |
155 |
Q |
| |
|
|||||||||||||| || ||||||||||||||||||||| |
|
|
| T |
45079875 |
ttaatatgcattttttattcatgatcctctctatatata |
45079837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 115 - 148
Target Start/End: Complemental strand, 45069067 - 45069034
Alignment:
| Q |
115 |
acttaatatgcattttgtagtcatgatcctctct |
148 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||| |
|
|
| T |
45069067 |
acttaatatgcattttgtagtcataatcctctct |
45069034 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University