View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12977_low_22 (Length: 418)

Name: NF12977_low_22
Description: NF12977
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12977_low_22
NF12977_low_22
[»] chr7 (33 HSPs)
chr7 (40-403)||(10690414-10690773)
chr7 (57-129)||(443336-443409)
chr7 (57-129)||(3035425-3035498)
chr7 (57-129)||(7092685-7092758)
chr7 (57-129)||(7094932-7095005)
chr7 (57-129)||(7472491-7472564)
chr7 (57-129)||(11756935-11757008)
chr7 (57-129)||(18345247-18345320)
chr7 (57-129)||(20625744-20625817)
chr7 (57-129)||(20629635-20629708)
chr7 (57-129)||(20642054-20642127)
chr7 (57-129)||(37412633-37412706)
chr7 (57-130)||(21470800-21470874)
chr7 (57-129)||(3677007-3677080)
chr7 (57-129)||(20299165-20299238)
chr7 (57-129)||(28487259-28487332)
chr7 (57-129)||(38395996-38396069)
chr7 (57-129)||(47865338-47865411)
chr7 (57-129)||(7470538-7470611)
chr7 (57-129)||(1849675-1849748)
chr7 (57-129)||(7349784-7349857)
chr7 (57-129)||(7352163-7352236)
chr7 (57-129)||(24258168-24258241)
chr7 (57-129)||(31156417-31156490)
chr7 (81-129)||(20297108-20297156)
chr7 (64-129)||(21989863-21989929)
chr7 (57-122)||(38393700-38393766)
chr7 (57-129)||(1606181-1606254)
chr7 (36-136)||(12310521-12310622)
chr7 (57-125)||(28485275-28485344)
chr7 (59-129)||(40281909-40281982)
chr7 (57-129)||(42331510-42331583)
chr7 (85-126)||(43254023-43254064)
[»] chr1 (28 HSPs)
chr1 (10-136)||(32260739-32260866)
chr1 (10-136)||(11693633-11693760)
chr1 (57-129)||(9459930-9460003)
chr1 (57-129)||(9463757-9463830)
chr1 (57-129)||(39931772-39931845)
chr1 (57-129)||(46432553-46432626)
chr1 (57-129)||(47905966-47906039)
chr1 (57-129)||(48664862-48664935)
chr1 (59-129)||(4131801-4131872)
chr1 (57-129)||(6997224-6997297)
chr1 (33-133)||(13785738-13785839)
chr1 (61-129)||(17325148-17325217)
chr1 (57-129)||(24325357-24325430)
chr1 (57-129)||(31736032-31736105)
chr1 (57-125)||(45693941-45694010)
chr1 (57-123)||(6115634-6115701)
chr1 (57-129)||(2949732-2949805)
chr1 (57-129)||(15295356-15295429)
chr1 (57-129)||(27339647-27339720)
chr1 (57-129)||(28998761-28998834)
chr1 (57-129)||(29004477-29004550)
chr1 (13-102)||(10115509-10115599)
chr1 (57-129)||(27337449-27337522)
chr1 (57-125)||(16561145-16561214)
chr1 (57-112)||(21948700-21948756)
chr1 (85-136)||(14352422-14352473)
chr1 (57-101)||(6996067-6996112)
chr1 (89-137)||(10115458-10115506)
[»] chr3 (19 HSPs)
chr3 (20-136)||(11072637-11072754)
chr3 (36-143)||(53974103-53974211)
chr3 (57-129)||(746432-746505)
chr3 (57-129)||(41848814-41848887)
chr3 (10-135)||(11066249-11066376)
chr3 (59-129)||(53918169-53918240)
chr3 (57-129)||(455583-455656)
chr3 (57-129)||(457960-458033)
chr3 (57-129)||(10622044-10622117)
chr3 (57-129)||(25533117-25533190)
chr3 (57-129)||(42991963-42992036)
chr3 (57-129)||(51943052-51943125)
chr3 (57-129)||(53915999-53916072)
chr3 (59-129)||(1313092-1313163)
chr3 (57-129)||(42989962-42990035)
chr3 (57-123)||(27636129-27636196)
chr3 (33-107)||(54287552-54287627)
chr3 (57-129)||(4104400-4104473)
chr3 (81-129)||(6561623-6561671)
[»] chr2 (15 HSPs)
chr2 (12-135)||(41303504-41303629)
chr2 (10-136)||(15693576-15693702)
chr2 (57-129)||(42924011-42924084)
chr2 (33-136)||(41304874-41304971)
chr2 (10-136)||(39286881-39287004)
chr2 (57-129)||(23452746-23452819)
chr2 (57-129)||(35216101-35216174)
chr2 (57-129)||(35218482-35218555)
chr2 (57-129)||(27583824-27583897)
chr2 (60-136)||(28568670-28568747)
chr2 (57-129)||(42452459-42452532)
chr2 (65-136)||(28568339-28568411)
chr2 (59-129)||(27136424-27136495)
chr2 (81-139)||(7502569-7502627)
chr2 (57-129)||(34575620-34575693)
[»] chr8 (13 HSPs)
chr8 (33-136)||(13986278-13986381)
chr8 (57-129)||(3265669-3265742)
chr8 (57-129)||(3873760-3873833)
chr8 (57-129)||(32339104-32339177)
chr8 (57-129)||(43529881-43529954)
chr8 (59-129)||(15808972-15809043)
chr8 (57-129)||(28283730-28283803)
chr8 (81-129)||(41384503-41384551)
chr8 (57-127)||(608482-608553)
chr8 (81-129)||(41382429-41382477)
chr8 (85-135)||(11701435-11701485)
chr8 (38-136)||(30679163-30679263)
chr8 (25-73)||(21006560-21006608)
[»] chr5 (20 HSPs)
chr5 (46-136)||(5779133-5779224)
chr5 (57-129)||(25803717-25803790)
chr5 (57-129)||(27912229-27912302)
chr5 (59-129)||(18596336-18596407)
chr5 (57-129)||(15551935-15552008)
chr5 (57-129)||(18468708-18468781)
chr5 (57-129)||(26098758-26098831)
chr5 (57-129)||(27910145-27910218)
chr5 (60-129)||(26097431-26097501)
chr5 (57-129)||(3373547-3373620)
chr5 (57-129)||(17415817-17415890)
chr5 (57-129)||(18509824-18509897)
chr5 (57-129)||(18511719-18511792)
chr5 (57-127)||(21288541-21288612)
chr5 (85-129)||(15143230-15143274)
chr5 (85-129)||(18466421-18466465)
chr5 (57-119)||(10586549-10586612)
chr5 (61-129)||(40221292-40221361)
chr5 (59-129)||(6661952-6662023)
chr5 (85-136)||(32520202-32520253)
[»] chr6 (16 HSPs)
chr6 (10-136)||(30445222-30445351)
chr6 (57-129)||(30035113-30035186)
chr6 (20-136)||(30443015-30443134)
chr6 (57-129)||(5275845-5275918)
chr6 (57-129)||(2629396-2629469)
chr6 (57-129)||(12196021-12196094)
chr6 (57-129)||(26933075-26933148)
chr6 (57-129)||(30966933-30967006)
chr6 (82-136)||(12158521-12158575)
chr6 (57-129)||(18317761-18317834)
chr6 (57-129)||(19705082-19705155)
chr6 (57-129)||(20526556-20526629)
chr6 (67-129)||(17011789-17011851)
chr6 (57-129)||(22858453-22858526)
chr6 (19-72)||(6872227-6872280)
chr6 (10-70)||(13484324-13484384)
[»] scaffold1674 (1 HSPs)
scaffold1674 (57-129)||(12-85)
[»] scaffold0468 (1 HSPs)
scaffold0468 (57-129)||(2102-2175)
[»] chr4 (20 HSPs)
chr4 (57-129)||(22135136-22135209)
chr4 (57-129)||(56030199-56030272)
chr4 (58-129)||(24347969-24348041)
chr4 (33-138)||(38209162-38209268)
chr4 (57-129)||(5100753-5100826)
chr4 (57-125)||(22132904-22132973)
chr4 (57-129)||(47211225-47211298)
chr4 (59-129)||(14787940-14788011)
chr4 (63-129)||(38890624-38890691)
chr4 (57-129)||(44600345-44600418)
chr4 (33-136)||(5516742-5516846)
chr4 (57-122)||(17662743-17662809)
chr4 (57-123)||(30136331-30136398)
chr4 (57-129)||(10112636-10112705)
chr4 (81-129)||(14789513-14789561)
chr4 (10-75)||(10979644-10979709)
chr4 (81-129)||(19322418-19322467)
chr4 (33-136)||(29609890-29609994)
chr4 (33-105)||(32274325-32274396)
chr4 (10-136)||(54929147-54929274)
[»] scaffold0005 (2 HSPs)
scaffold0005 (59-129)||(51719-51790)
scaffold0005 (81-129)||(50169-50217)
[»] scaffold0154 (1 HSPs)
scaffold0154 (57-125)||(11978-12047)
[»] scaffold0511 (1 HSPs)
scaffold0511 (57-129)||(1745-1818)
[»] scaffold0031 (1 HSPs)
scaffold0031 (57-129)||(78893-78966)
[»] scaffold0474 (1 HSPs)
scaffold0474 (81-136)||(10436-10491)
[»] scaffold0133 (1 HSPs)
scaffold0133 (57-127)||(4558-4629)
[»] scaffold0008 (1 HSPs)
scaffold0008 (10-141)||(57875-58007)


Alignment Details
Target: chr7 (Bit Score: 303; Significance: 1e-170; HSPs: 33)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 40 - 403
Target Start/End: Complemental strand, 10690773 - 10690414
Alignment:
Q  40 agcaacaatcttttgaaagcacaaaatatatttgaaacatgcttttatatttttagcaacaatcttctccatccatcaaattttgagtcaatttcaatag 139  Q
    ||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  10690773 agcaacaattttttgaaagcacaaaatatatttgaaacatacttttatatttttagcaacaatcttctccctccatcaaattttgagtcaatttcaatag 10690674  T
Q  140 ttacatatctatatggccaaggaatttccattaagcggtttttaggtcttaactcttaactctttctttcatacaaagtaaccttcgttggtctatgaat 239  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    |||||||||||||||| |||||||| ||||    
T  10690673 ttacatatctatatgaccaaggaatttccattaagcggtttttaggtcttaactcttaactctttc----atacaaagtaaccttctttggtctaagaat 10690578  T
Q  240 aagaggtagggttttactcatcagcacctactggcttaattgtttcccttgcttctacaaagattattcttgagaccaattctctgcatggaaaaagtag 339  Q
    ||||||||||||||||||||||  ||| || |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10690577 aagaggtagggttttactcatcgccacatagtggcttaattgtttccctcgcttctacaaagattattcttgagaccaattctctgcatggaaaaagtag 10690478  T
Q  340 cagcacctccaagttctcatggaatttcttccatggttaaaagaaagacaccatcagaacttag 403  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10690477 cagcacctccaagttctcatggaatttcttccatggttaaaagaaagacaccatcagaacttag 10690414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 57 - 129
Target Start/End: Complemental strand, 443409 - 443336
Alignment:
Q  57 agcacaaaatatatttgaaacatg-cttttatatttttagcaacaatcttctccatccatcaaattttgagtca 129  Q
    ||||||||||||||||||||||   |||||||||||||||||||||| ||||||||||||||||||||||||||    
T  443409 agcacaaaatatatttgaaacaaatcttttatatttttagcaacaatattctccatccatcaaattttgagtca 443336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 57 - 129
Target Start/End: Complemental strand, 3035498 - 3035425
Alignment:
Q  57 agcacaaaatatatttgaaacatg-cttttatatttttagcaacaatcttctccatccatcaaattttgagtca 129  Q
    ||||||||||||||||||||||   |||||||||||||||||||||| ||||||||||||||||||||||||||    
T  3035498 agcacaaaatatatttgaaacaaatcttttatatttttagcaacaatattctccatccatcaaattttgagtca 3035425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 57 - 129
Target Start/End: Original strand, 7092685 - 7092758
Alignment:
Q  57 agcacaaaatatatttgaaacatg-cttttatatttttagcaacaatcttctccatccatcaaattttgagtca 129  Q
    ||||||||||||||||||||||   |||||||||||||||||||||| ||||||||||||||||||||||||||    
T  7092685 agcacaaaatatatttgaaacaaatcttttatatttttagcaacaatattctccatccatcaaattttgagtca 7092758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 57 - 129
Target Start/End: Original strand, 7094932 - 7095005
Alignment:
Q  57 agcacaaaatatatttgaaacatg-cttttatatttttagcaacaatcttctccatccatcaaattttgagtca 129  Q
    ||||||||||||||||||||||   |||||||||||||||||||||| ||||||||||||||||||||||||||    
T  7094932 agcacaaaatatatttgaaacaaatcttttatatttttagcaacaatattctccatccatcaaattttgagtca 7095005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 57 - 129
Target Start/End: Original strand, 7472491 - 7472564
Alignment:
Q  57 agcacaaaatatatttgaaacatg-cttttatatttttagcaacaatcttctccatccatcaaattttgagtca 129  Q
    ||||||||||||||||||||||   |||||||||||||||||||||| ||||||||||||||||||||||||||    
T  7472491 agcacaaaatatatttgaaacaaatcttttatatttttagcaacaatattctccatccatcaaattttgagtca 7472564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 57 - 129
Target Start/End: Complemental strand, 11757008 - 11756935
Alignment:
Q  57 agcacaaaatatatttgaaacatg-cttttatatttttagcaacaatcttctccatccatcaaattttgagtca 129  Q
    ||||||||||||||||||||||   |||||||||||||||||||||| ||||||||||||||||||||||||||    
T  11757008 agcacaaaatatatttgaaacaaatcttttatatttttagcaacaatattctccatccatcaaattttgagtca 11756935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 57 - 129
Target Start/End: Complemental strand, 18345320 - 18345247
Alignment:
Q  57 agcacaaaatatatttgaaacatg-cttttatatttttagcaacaatcttctccatccatcaaattttgagtca 129  Q
    ||||||||||||||||||||||   |||||||||||||||||||||| ||||||||||||||||||||||||||    
T  18345320 agcacaaaatatatttgaaacaaatcttttatatttttagcaacaatattctccatccatcaaattttgagtca 18345247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 57 - 129
Target Start/End: Complemental strand, 20625817 - 20625744
Alignment:
Q  57 agcacaaaatatatttgaaacatg-cttttatatttttagcaacaatcttctccatccatcaaattttgagtca 129  Q
    ||||||||||||||||||||||   |||||||||||||||||||||| ||||||||||||||||||||||||||    
T  20625817 agcacaaaatatatttgaaacaaatcttttatatttttagcaacaatattctccatccatcaaattttgagtca 20625744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 57 - 129
Target Start/End: Complemental strand, 20629708 - 20629635
Alignment:
Q  57 agcacaaaatatatttgaaacatg-cttttatatttttagcaacaatcttctccatccatcaaattttgagtca 129  Q
    ||||||||||||||||||||||   |||||||||||||||||||||| ||||||||||||||||||||||||||    
T  20629708 agcacaaaatatatttgaaacaaatcttttatatttttagcaacaatattctccatccatcaaattttgagtca 20629635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 57 - 129
Target Start/End: Complemental strand, 20642127 - 20642054
Alignment:
Q  57 agcacaaaatatatttgaaacatg-cttttatatttttagcaacaatcttctccatccatcaaattttgagtca 129  Q
    ||||||||||||||||||||||   |||||||||||||||||||||| ||||||||||||||||||||||||||    
T  20642127 agcacaaaatatatttgaaacaaatcttttatatttttagcaacaatattctccatccatcaaattttgagtca 20642054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 57 - 129
Target Start/End: Original strand, 37412633 - 37412706
Alignment:
Q  57 agcacaaaatatatttgaaacatg-cttttatatttttagcaacaatcttctccatccatcaaattttgagtca 129  Q
    ||||||||||||||||||||||   |||||||||||||||||||||| ||||||||||||||||||||||||||    
T  37412633 agcacaaaatatatttgaaacaaatcttttatatttttagcaacaatattctccatccatcaaattttgagtca 37412706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 57 - 130
Target Start/End: Original strand, 21470800 - 21470874
Alignment:
Q  57 agcacaaaatatatttgaaacatg-cttttatatttttagcaacaatcttctccatccatcaaattttgagtcaa 130  Q
    ||||||||||||||||||||||   |||||||||||||||||||||| ||||||||||||||||||| |||||||    
T  21470800 agcacaaaatatatttgaaacaaatcttttatatttttagcaacaatattctccatccatcaaatttggagtcaa 21470874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 57 - 129
Target Start/End: Complemental strand, 3677080 - 3677007
Alignment:
Q  57 agcacaaaatatatttgaaacatg-cttttatatttttagcaacaatcttctccatccatcaaattttgagtca 129  Q
    ||||||||||||||||||||||   |||||||||||||||||||||| ||||||||| ||||||||||||||||    
T  3677080 agcacaaaatatatttgaaacaaatcttttatatttttagcaacaatattctccatctatcaaattttgagtca 3677007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 57 - 129
Target Start/End: Complemental strand, 20299238 - 20299165
Alignment:
Q  57 agcacaaaatatatttgaaacatg-cttttatatttttagcaacaatcttctccatccatcaaattttgagtca 129  Q
    |||||||||||||||||||| |   |||||||||||||||||||||| ||||||||||||||||||||||||||    
T  20299238 agcacaaaatatatttgaaataaatcttttatatttttagcaacaatattctccatccatcaaattttgagtca 20299165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 57 - 129
Target Start/End: Complemental strand, 28487332 - 28487259
Alignment:
Q  57 agcacaaaatatatttgaaacatg-cttttatatttttagcaacaatcttctccatccatcaaattttgagtca 129  Q
    ||||||||||||||||||| ||   |||||||||||||||||||||| ||||||||||||||||||||||||||    
T  28487332 agcacaaaatatatttgaagcaaatcttttatatttttagcaacaatattctccatccatcaaattttgagtca 28487259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 57 - 129
Target Start/End: Complemental strand, 38396069 - 38395996
Alignment:
Q  57 agcacaaaatatatttgaaacatg-cttttatatttttagcaacaatcttctccatccatcaaattttgagtca 129  Q
    ||||||||||||||||||||||   |||||||||||||||||||||| ||||||||||||||||||| ||||||    
T  38396069 agcacaaaatatatttgaaacaaatcttttatatttttagcaacaatattctccatccatcaaatttggagtca 38395996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 57 - 129
Target Start/End: Complemental strand, 47865411 - 47865338
Alignment:
Q  57 agcacaaaatatatttgaaacatg-cttttatatttttagcaacaatcttctccatccatcaaattttgagtca 129  Q
    ||||||||||||||||||||||   |||||||||||||||||||||| ||||||||||||||||||| ||||||    
T  47865411 agcacaaaatatatttgaaacaaatcttttatatttttagcaacaatattctccatccatcaaatttggagtca 47865338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 57 - 129
Target Start/End: Original strand, 7470538 - 7470611
Alignment:
Q  57 agcacaaaatatatttgaaaca--tgcttttatatttttagcaacaatcttctccatccatcaaattttgagtca 129  Q
    ||||||||||||||||||||||  || ||||||||||||||||| ||| ||||||||||||||||||||||||||    
T  7470538 agcacaaaatatatttgaaacaaatg-ttttatatttttagcaataatattctccatccatcaaattttgagtca 7470611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 57 - 129
Target Start/End: Complemental strand, 1849748 - 1849675
Alignment:
Q  57 agcacaaaatatatttgaaacatg-cttttatatttttagcaacaatcttctccatccatcaaattttgagtca 129  Q
    ||||||||||||||||||||||   |||||||||||||||||||||| |||| | |||||||||||||||||||    
T  1849748 agcacaaaatatatttgaaacaaatcttttatatttttagcaacaatattcttcttccatcaaattttgagtca 1849675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 57 - 129
Target Start/End: Original strand, 7349784 - 7349857
Alignment:
Q  57 agcacaaaatatatttgaaacatg-cttttatatttttagcaacaatcttctccatccatcaaattttgagtca 129  Q
    ||||||| ||||||||||||||   |||||||||||||||||||||| ||||||||||||||| ||||||||||    
T  7349784 agcacaatatatatttgaaacaaatcttttatatttttagcaacaatattctccatccatcaatttttgagtca 7349857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 57 - 129
Target Start/End: Original strand, 7352163 - 7352236
Alignment:
Q  57 agcacaaaatatatttgaaacatg-cttttatatttttagcaacaatcttctccatccatcaaattttgagtca 129  Q
    ||||||| ||||||||||||||   |||||||||||||||||||||| ||||||||||||||| ||||||||||    
T  7352163 agcacaatatatatttgaaacaaatcttttatatttttagcaacaatattctccatccatcaatttttgagtca 7352236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 57 - 129
Target Start/End: Complemental strand, 24258241 - 24258168
Alignment:
Q  57 agcacaaaatatatttgaaacatg-cttttatatttttagcaacaatcttctccatccatcaaattttgagtca 129  Q
    ||||||||||||||||||||||   |||||||||||||||||||||| |||| | |||||||||||||||||||    
T  24258241 agcacaaaatatatttgaaacaaatcttttatatttttagcaacaatattcttcttccatcaaattttgagtca 24258168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 57 - 129
Target Start/End: Original strand, 31156417 - 31156490
Alignment:
Q  57 agcacaaaatatatttgaaacatg-cttttatatttttagcaacaatcttctccatccatcaaattttgagtca 129  Q
    ||||||| ||||||||||||||   |||||||||||||||||||||| ||||||||||||||| ||||||||||    
T  31156417 agcacaatatatatttgaaacaaatcttttatatttttagcaacaatattctccatccatcaatttttgagtca 31156490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 81 - 129
Target Start/End: Complemental strand, 20297156 - 20297108
Alignment:
Q  81 cttttatatttttagcaacaatcttctccatccatcaaattttgagtca 129  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||    
T  20297156 cttttatatttttagcaacaatattctccatccatcaaattttgagtca 20297108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 64 - 129
Target Start/End: Complemental strand, 21989929 - 21989863
Alignment:
Q  64 aatatatttgaaacatg-cttttatatttttagcaacaatcttctccatccatcaaattttgagtca 129  Q
    |||||||||||||||   |||||||||||||||||||||| ||||||||||||||||||||| ||||    
T  21989929 aatatatttgaaacaaatcttttatatttttagcaacaatattctccatccatcaaattttgggtca 21989863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 57 - 122
Target Start/End: Complemental strand, 38393766 - 38393700
Alignment:
Q  57 agcacaaaatatatttgaaacatg-cttttatatttttagcaacaatcttctccatccatcaaattt 122  Q
    ||||||||||||||||||||||   ||| |||||||||||||||||| |||||||||||||||||||    
T  38393766 agcacaaaatatatttgaaacaaatcttatatatttttagcaacaatattctccatccatcaaattt 38393700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 57 - 129
Target Start/End: Complemental strand, 1606254 - 1606181
Alignment:
Q  57 agcacaaaatatatttgaaacatg-cttttatatttttagcaacaatcttctccatccatcaaattttgagtca 129  Q
    ||||||| ||||||||||||||   |||||||||||||||||||||| |||| | |||||||||||||||||||    
T  1606254 agcacaatatatatttgaaacaaatcttttatatttttagcaacaatattcttcttccatcaaattttgagtca 1606181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 36 - 136
Target Start/End: Original strand, 12310521 - 12310622
Alignment:
Q  36 tttcagcaacaatcttttgaaagcacaaaatatatttgaaac-atgcttttatatttttagcaacaatcttctccatccatcaaattttgagtcaatttc 134  Q
    |||||||||||||||| |  |||||||||||||||||||||| |  |||||||||   ||||||||||||||| ||||||| ||||||  ||| ||||||    
T  12310521 tttcagcaacaatcttctagaagcacaaaatatatttgaaacaaatcttttatatcagtagcaacaatcttcttcatccattaaatttaaagttaatttc 12310620  T
Q  135 aa 136  Q
    ||    
T  12310621 aa 12310622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 57 - 125
Target Start/End: Complemental strand, 28485344 - 28485275
Alignment:
Q  57 agcacaaaatatatttgaaacatgc-ttttatatttttagcaacaatcttctccatccatcaaattttga 125  Q
    ||||||||||||||||||||||    ||||||||||||||||||||| |||| |||||||||||||||||    
T  28485344 agcacaaaatatatttgaaacaaatattttatatttttagcaacaatattcttcatccatcaaattttga 28485275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 59 - 129
Target Start/End: Original strand, 40281909 - 40281982
Alignment:
Q  59 cacaaaatatatttgaaacatgc-ttttatatttttagcaacaa--tcttctccatccatcaaattttgagtca 129  Q
    ||||||||||||||||||||    ||||||||||||||||||||  |||||| |||||||||||||||||||||    
T  40281909 cacaaaatatatttgaaacaaatattttatatttttagcaacaaattcttcttcatccatcaaattttgagtca 40281982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 57 - 129
Target Start/End: Original strand, 42331510 - 42331583
Alignment:
Q  57 agcacaaaatatatttgaaacatg-cttttatatttttagcaacaatcttctccatccatcaaattttgagtca 129  Q
    |||||||||||||||| |||||   |||||||||||||||||||||| |||| ||| ||||||||||| |||||    
T  42331510 agcacaaaatatatttaaaacaaatcttttatatttttagcaacaatattcttcattcatcaaattttaagtca 42331583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 85 - 126
Target Start/End: Original strand, 43254023 - 43254064
Alignment:
Q  85 tatatttttagcaacaatcttctccatccatcaaattttgag 126  Q
    |||||||||||||||||| |||||||||||||||||||||||    
T  43254023 tatatttttagcaacaatattctccatccatcaaattttgag 43254064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 84; Significance: 9e-40; HSPs: 28)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 10 - 136
Target Start/End: Complemental strand, 32260866 - 32260739
Alignment:
Q  10 aatatatctattgtacataattttattttcagcaacaatcttttgaaagcacaaaatatatttgaaaca-tgcttttatatttttagcaacaatcttctc 108  Q
    ||||||| |||||| ||||| | ||||||||||||||||||| ||||| |||||||||||||| ||||| | |||||||||||||||||||||||||||     
T  32260866 aatatatttattgttcataaatatattttcagcaacaatcttctgaaaacacaaaatatattttaaacaattcttttatatttttagcaacaatcttctt 32260767  T
Q  109 catccatcaaattttgagtcaatttcaa 136  Q
    ||||||||||||||||||||||||||||    
T  32260766 catccatcaaattttgagtcaatttcaa 32260739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 10 - 136
Target Start/End: Original strand, 11693633 - 11693760
Alignment:
Q  10 aatatatctattgtacataattttattttcagcaacaatcttttgaaagcacaaaatatatttgaaac-atgcttttatatttttagcaacaatcttctc 108  Q
    ||||||| |||||| ||||| | ||||||||||||||||||||||||||||| |||||||||| |||| |   ||||||| ||||||||| ||||||||     
T  11693633 aatatatttattgtccataaatatattttcagcaacaatcttttgaaagcacgaaatatatttaaaacaaaatttttataattttagcaataatcttctt 11693732  T
Q  109 catccatcaaattttgagtcaatttcaa 136  Q
    ||||||||||||||||||||||||||||    
T  11693733 catccatcaaattttgagtcaatttcaa 11693760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 57 - 129
Target Start/End: Original strand, 9459930 - 9460003
Alignment:
Q  57 agcacaaaatatatttgaaacatg-cttttatatttttagcaacaatcttctccatccatcaaattttgagtca 129  Q
    ||||||||||||||||||||||   |||||||||||||||||||||| ||||||||||||||||||||||||||    
T  9459930 agcacaaaatatatttgaaacaaatcttttatatttttagcaacaatattctccatccatcaaattttgagtca 9460003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 57 - 129
Target Start/End: Original strand, 9463757 - 9463830
Alignment:
Q  57 agcacaaaatatatttgaaacatg-cttttatatttttagcaacaatcttctccatccatcaaattttgagtca 129  Q
    ||||||||||||||||||||||   |||||||||||||||||||||| ||||||||||||||||||||||||||    
T  9463757 agcacaaaatatatttgaaacaaatcttttatatttttagcaacaatattctccatccatcaaattttgagtca 9463830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 57 - 129
Target Start/End: Complemental strand, 39931845 - 39931772
Alignment:
Q  57 agcacaaaatatatttgaaacatg-cttttatatttttagcaacaatcttctccatccatcaaattttgagtca 129  Q
    ||||||||||||||||||||||   |||||||||||||||||||||| ||||||||||||||||||||||||||    
T  39931845 agcacaaaatatatttgaaacaaatcttttatatttttagcaacaatattctccatccatcaaattttgagtca 39931772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 57 - 129
Target Start/End: Original strand, 46432553 - 46432626
Alignment:
Q  57 agcacaaaatatatttgaaacatg-cttttatatttttagcaacaatcttctccatccatcaaattttgagtca 129  Q
    ||||||||||||||||||||||   |||||||||||||||||||||| ||||||||||||||||||||||||||    
T  46432553 agcacaaaatatatttgaaacaaatcttttatatttttagcaacaatattctccatccatcaaattttgagtca 46432626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 57 - 129
Target Start/End: Complemental strand, 47906039 - 47905966
Alignment:
Q  57 agcacaaaatatatttgaaacatg-cttttatatttttagcaacaatcttctccatccatcaaattttgagtca 129  Q
    ||||||||||||||||||||||   |||||||||||||||||||||| ||||||||||||||||||||||||||    
T  47906039 agcacaaaatatatttgaaacaaatcttttatatttttagcaacaatattctccatccatcaaattttgagtca 47905966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 57 - 129
Target Start/End: Complemental strand, 48664935 - 48664862
Alignment:
Q  57 agcacaaaatatatttgaaacatg-cttttatatttttagcaacaatcttctccatccatcaaattttgagtca 129  Q
    ||||||||||||||||||||||   |||||||||||||||||||||| ||||||||||||||||||||||||||    
T  48664935 agcacaaaatatatttgaaacaaatcttttatatttttagcaacaatattctccatccatcaaattttgagtca 48664862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 59 - 129
Target Start/End: Original strand, 4131801 - 4131872
Alignment:
Q  59 cacaaaatatatttgaaacatg-cttttatatttttagcaacaatcttctccatccatcaaattttgagtca 129  Q
    ||||||||||||||||||||   |||||||||||||||||||||| ||||||||||||||||||||||||||    
T  4131801 cacaaaatatatttgaaacaaatcttttatatttttagcaacaatattctccatccatcaaattttgagtca 4131872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 57 - 129
Target Start/End: Complemental strand, 6997297 - 6997224
Alignment:
Q  57 agcacaaaatatatttgaaacatg-cttttatatttttagcaacaatcttctccatccatcaaattttgagtca 129  Q
    ||||||||||||||||||||||   |||||||||||||||||| ||| ||||||||||||||||||||||||||    
T  6997297 agcacaaaatatatttgaaacaaatcttttatatttttagcaataatattctccatccatcaaattttgagtca 6997224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 33 - 133
Target Start/End: Original strand, 13785738 - 13785839
Alignment:
Q  33 tattttcagcaacaatcttttgaaagcacaaaatatatttgaaacatg-cttttatatttttagcaacaatcttctccatccatcaaattttgagtcaat 131  Q
    |||||||||||||||| || |  || ||||||||||||||||||||   |||| ||||||||||| ||||| ||||||||||||||| ||||||||||||    
T  13785738 tattttcagcaacaatattctagaaacacaaaatatatttgaaacaaatctttcatatttttagcgacaatattctccatccatcaatttttgagtcaat 13785837  T
Q  132 tt 133  Q
    ||    
T  13785838 tt 13785839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 61 - 129
Target Start/End: Original strand, 17325148 - 17325217
Alignment:
Q  61 caaaatatatttgaaacatg-cttttatatttttagcaacaatcttctccatccatcaaattttgagtca 129  Q
    ||||||||||||||||||   |||||||||||||||||||||| ||||||||||||||||||||||||||    
T  17325148 caaaatatatttgaaacaaatcttttatatttttagcaacaatattctccatccatcaaattttgagtca 17325217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 57 - 129
Target Start/End: Complemental strand, 24325430 - 24325357
Alignment:
Q  57 agcacaaaatatatttgaaacatg-cttttatatttttagcaacaatcttctccatccatcaaattttgagtca 129  Q
    ||||||| ||||||||||||||   |||||||||||||||||||||| ||||||||||||||||||||||||||    
T  24325430 agcacaatatatatttgaaacaaatcttttatatttttagcaacaatattctccatccatcaaattttgagtca 24325357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 57 - 129
Target Start/End: Original strand, 31736032 - 31736105
Alignment:
Q  57 agcacaaaatatatttgaaacatg-cttttatatttttagcaacaatcttctccatccatcaaattttgagtca 129  Q
    ||||||||||||||||||||||   |||||||||||||||||||||| |||||| |||||||||||||||||||    
T  31736032 agcacaaaatatatttgaaacaaatcttttatatttttagcaacaatattctccttccatcaaattttgagtca 31736105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 57 - 125
Target Start/End: Original strand, 45693941 - 45694010
Alignment:
Q  57 agcacaaaatatatttgaaacatg-cttttatatttttagcaacaatcttctccatccatcaaattttga 125  Q
    ||||||||||||||||||||||   |||||||||||||||||||||| ||||||||||||||||||||||    
T  45693941 agcacaaaatatatttgaaacaaatcttttatatttttagcaacaatattctccatccatcaaattttga 45694010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 57 - 123
Target Start/End: Original strand, 6115634 - 6115701
Alignment:
Q  57 agcacaaaatatatttgaaacatg-cttttatatttttagcaacaatcttctccatccatcaaatttt 123  Q
    ||||||||||||||||||||||   |||||||||||||||||||||| ||||||||||||||||||||    
T  6115634 agcacaaaatatatttgaaacaaatcttttatatttttagcaacaatattctccatccatcaaatttt 6115701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 57 - 129
Target Start/End: Original strand, 2949732 - 2949805
Alignment:
Q  57 agcacaaaatatatttgaaacatg-cttttatatttttagcaacaatcttctccatccatcaaattttgagtca 129  Q
    ||||||||||||||||||||||   |||||||||||||||||||||| |||| ||||||| |||||||||||||    
T  2949732 agcacaaaatatatttgaaacaaatcttttatatttttagcaacaatattcttcatccatgaaattttgagtca 2949805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 57 - 129
Target Start/End: Original strand, 15295356 - 15295429
Alignment:
Q  57 agcacaaaatatatttgaaacatg-cttttatatttttagcaacaatcttctccatccatcaaattttgagtca 129  Q
    ||||||||||||||||||||||   |||||||||||||||||||||| |||| | |||||||||||||||||||    
T  15295356 agcacaaaatatatttgaaacaaatcttttatatttttagcaacaatattcttcttccatcaaattttgagtca 15295429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 57 - 129
Target Start/End: Original strand, 27339647 - 27339720
Alignment:
Q  57 agcacaaaatatatttgaaacatg-cttttatatttttagcaacaatcttctccatccatcaaattttgagtca 129  Q
    ||||||||||||||||||||||   |||||||||||||||||||||| |||||||||| |||||||| ||||||    
T  27339647 agcacaaaatatatttgaaacaaatcttttatatttttagcaacaatattctccatccgtcaaatttggagtca 27339720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 57 - 129
Target Start/End: Original strand, 28998761 - 28998834
Alignment:
Q  57 agcacaaaatatatttgaaacatg-cttttatatttttagcaacaatcttctccatccatcaaattttgagtca 129  Q
    |||||||||||||||| |||||   |||||||| ||||||||||||| ||||||||||||||||||||||||||    
T  28998761 agcacaaaatatattttaaacaaatcttttatagttttagcaacaatattctccatccatcaaattttgagtca 28998834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 57 - 129
Target Start/End: Original strand, 29004477 - 29004550
Alignment:
Q  57 agcacaaaatatatttgaaacatg-cttttatatttttagcaacaatcttctccatccatcaaattttgagtca 129  Q
    |||||||||||||||| |||||   |||||||| ||||||||||||| ||||||||||||||||||||||||||    
T  29004477 agcacaaaatatattttaaacaaatcttttatagttttagcaacaatattctccatccatcaaattttgagtca 29004550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 13 - 102
Target Start/End: Complemental strand, 10115599 - 10115509
Alignment:
Q  13 atatctattgtacataattttattttcagcaacaatcttttgaaagcacaaaatatatttgaaac-atgcttttatatttttagcaacaat 102  Q
    |||| |||||| ||||| | |||||||| |||||||||| || |||||||||||||||||||||| |  |||||||||||||| |||||||    
T  10115599 atatttattgtccataaatatattttcaacaacaatcttatggaagcacaaaatatatttgaaacaaatcttttatatttttaacaacaat 10115509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 57 - 129
Target Start/End: Original strand, 27337449 - 27337522
Alignment:
Q  57 agcacaaaatatatttgaaacatg-cttttatatttttagcaacaatcttctccatccatcaaattttgagtca 129  Q
    ||||||||||||||||||||||   ||| |||||||||||||||||| ||| ||||||||||||||| ||||||    
T  27337449 agcacaaaatatatttgaaacaaatcttatatatttttagcaacaatattccccatccatcaaatttggagtca 27337522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 57 - 125
Target Start/End: Complemental strand, 16561214 - 16561145
Alignment:
Q  57 agcacaaaatatatttgaaacatgc-ttttatatttttagcaacaatcttctccatccatcaaattttga 125  Q
    ||||||||||||||||||||||    ||||||||||||||||||||| |||| |||||| ||||||||||    
T  16561214 agcacaaaatatatttgaaacaaatattttatatttttagcaacaatattcttcatccaacaaattttga 16561145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 57 - 112
Target Start/End: Original strand, 21948700 - 21948756
Alignment:
Q  57 agcacaaaatatatttgaaacatg-cttttatatttttagcaacaatcttctccatc 112  Q
    ||||||||||||||||||||||   |||||||||||||||||||||| |||||||||    
T  21948700 agcacaaaatatatttgaaacaaatcttttatatttttagcaacaatattctccatc 21948756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 85 - 136
Target Start/End: Complemental strand, 14352473 - 14352422
Alignment:
Q  85 tatatttttagcaacaatcttctccatccatcaaattttgagtcaatttcaa 136  Q
    ||||| ||||| ||||||||||| ||||||||||||||| ||||||||||||    
T  14352473 tatatgtttagtaacaatcttcttcatccatcaaattttaagtcaatttcaa 14352422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 57 - 101
Target Start/End: Complemental strand, 6996112 - 6996067
Alignment:
Q  57 agcacaaaatatatttgaaacatg-cttttatatttttagcaacaa 101  Q
    |||||||||||||||||||||| | |||||||||||||||||||||    
T  6996112 agcacaaaatatatttgaaacaagtcttttatatttttagcaacaa 6996067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 89 - 137
Target Start/End: Complemental strand, 10115506 - 10115458
Alignment:
Q  89 tttttagcaacaatcttctccatccatcaaattttgagtcaatttcaat 137  Q
    ||||| |||||||| ||||  ||||||||||||||||||||||||||||    
T  10115506 ttttttgcaacaatattcttaatccatcaaattttgagtcaatttcaat 10115458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 66; Significance: 5e-29; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 20 - 136
Target Start/End: Complemental strand, 11072754 - 11072637
Alignment:
Q  20 ttgtacataattttattttcagcaacaatcttttgaaagcacaaaatatatttgaaacatg-cttttatatttttagcaacaatcttctccatccatcaa 118  Q
    |||| ||||| | ||||||||||||||||||| || |||||||| ||||||||||||||   | ||||||||||| ||||||||||||| ||||||||||    
T  11072754 ttgtccataaatgtattttcagcaacaatcttctggaagcacaagatatatttgaaacaaatcatttatattttttgcaacaatcttcttcatccatcaa 11072655  T
Q  119 attttgagtcaatttcaa 136  Q
    ||||||||||||||||||    
T  11072654 attttgagtcaatttcaa 11072637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 36 - 143
Target Start/End: Original strand, 53974103 - 53974211
Alignment:
Q  36 tttcagcaacaatcttttgaaagcacaaaatatatttgaaacatg-cttttatatttttagcaacaatcttctccatccatcaaattttgagtcaatttc 134  Q
    |||||||||||||||| || |||||||||||||| ||||||||   |||||||||||||| ||||||  |||| ||||||||||||||||||||||||||    
T  53974103 tttcagcaacaatcttctggaagcacaaaatataattgaaacaaatcttttatatttttaacaacaacattcttcatccatcaaattttgagtcaatttc 53974202  T
Q  135 aatagttac 143  Q
    |||| ||||    
T  53974203 aatatttac 53974211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 57 - 129
Target Start/End: Complemental strand, 746505 - 746432
Alignment:
Q  57 agcacaaaatatatttgaaacatg-cttttatatttttagcaacaatcttctccatccatcaaattttgagtca 129  Q
    ||||||||||||||||||||||   |||||||||||||||||||||| ||||||||||||||||||||||||||    
T  746505 agcacaaaatatatttgaaacaaatcttttatatttttagcaacaatattctccatccatcaaattttgagtca 746432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 57 - 129
Target Start/End: Complemental strand, 41848887 - 41848814
Alignment:
Q  57 agcacaaaatatatttgaaacatg-cttttatatttttagcaacaatcttctccatccatcaaattttgagtca 129  Q
    ||||||||||||||||||||||   |||||||||||||||||||||| ||||||||||||||||||||||||||    
T  41848887 agcacaaaatatatttgaaacaaatcttttatatttttagcaacaatattctccatccatcaaattttgagtca 41848814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 10 - 135
Target Start/End: Complemental strand, 11066376 - 11066249
Alignment:
Q  10 aatatatctattgtacataattttattttcagcaacaatcttttgaaagcacaaaatatatttgaaac-atgcttttat-atttttagcaacaatcttct 107  Q
    ||||||| |||||| ||||| | |||||||| ||||||||||  |||||||||| ||||||||||||| |  | |||||  |||||||||||||| ||||    
T  11066376 aatatatttattgtccataaatgtattttcaacaacaatcttccgaaagcacaagatatatttgaaacaaatcatttatcttttttagcaacaatattct 11066277  T
Q  108 ccatccatcaaattttgagtcaatttca 135  Q
     ||||||||||||| |||||||||||||    
T  11066276 tcatccatcaaattatgagtcaatttca 11066249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 59 - 129
Target Start/End: Original strand, 53918169 - 53918240
Alignment:
Q  59 cacaaaatatatttgaaacatg-cttttatatttttagcaacaatcttctccatccatcaaattttgagtca 129  Q
    ||||||||||||||||||||   |||||||||||||||||||||| ||||||||||||||||||||||||||    
T  53918169 cacaaaatatatttgaaacaaatcttttatatttttagcaacaatattctccatccatcaaattttgagtca 53918240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 57 - 129
Target Start/End: Complemental strand, 455656 - 455583
Alignment:
Q  57 agcacaaaatatatttgaaacatg-cttttatatttttagcaacaatcttctccatccatcaaattttgagtca 129  Q
    ||||||||||||||||||||||   |||||||||||||||||||||| ||| ||||||||||||||||||||||    
T  455656 agcacaaaatatatttgaaacaaatcttttatatttttagcaacaatattccccatccatcaaattttgagtca 455583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 57 - 129
Target Start/End: Complemental strand, 458033 - 457960
Alignment:
Q  57 agcacaaaatatatttgaaacatg-cttttatatttttagcaacaatcttctccatccatcaaattttgagtca 129  Q
    ||||||||||||||||||||||   |||||||||||||||||||||| ||| ||||||||||||||||||||||    
T  458033 agcacaaaatatatttgaaacaaatcttttatatttttagcaacaatattccccatccatcaaattttgagtca 457960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 57 - 129
Target Start/End: Original strand, 10622044 - 10622117
Alignment:
Q  57 agcacaaaatatatttgaaacatg-cttttatatttttagcaacaatcttctccatccatcaaattttgagtca 129  Q
    ||||||| ||||||||||||||   |||||||||||||||||||||| ||||||||||||||||||||||||||    
T  10622044 agcacaatatatatttgaaacaaatcttttatatttttagcaacaatattctccatccatcaaattttgagtca 10622117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 57 - 129
Target Start/End: Complemental strand, 25533190 - 25533117
Alignment:
Q  57 agcacaaaatatatttgaaacatg-cttttatatttttagcaacaatcttctccatccatcaaattttgagtca 129  Q
    |||| |||||||||||||||||   |||||||||||||||||||||| ||||||||||||||||||||||||||    
T  25533190 agcaaaaaatatatttgaaacaaatcttttatatttttagcaacaatattctccatccatcaaattttgagtca 25533117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 57 - 129
Target Start/End: Complemental strand, 42992036 - 42991963
Alignment:
Q  57 agcacaaaatatatttgaaacatgc-ttttatatttttagcaacaatcttctccatccatcaaattttgagtca 129  Q
    ||||||||||||||||||||||  | ||||||||||||| ||||||| ||||||||||||||||||||||||||    
T  42992036 agcacaaaatatatttgaaacaaaccttttatatttttaacaacaatattctccatccatcaaattttgagtca 42991963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 57 - 129
Target Start/End: Complemental strand, 51943125 - 51943052
Alignment:
Q  57 agcacaaaatatatttgaaacatg-cttttatatttttagcaacaatcttctccatccatcaaattttgagtca 129  Q
    ||||||||||||||||||||||   |||||||||||||||||||||| |||| |||||||||||||||||||||    
T  51943125 agcacaaaatatatttgaaacaaatcttttatatttttagcaacaatattcttcatccatcaaattttgagtca 51943052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 57 - 129
Target Start/End: Original strand, 53915999 - 53916072
Alignment:
Q  57 agcacaaaatatatttgaaacatg-cttttatatttttagcaacaatcttctccatccatcaaattttgagtca 129  Q
    ||||||||||||||||||||||   |||||||||||||||||||||| |||||||||| |||||||||||||||    
T  53915999 agcacaaaatatatttgaaacaaatcttttatatttttagcaacaatattctccatccctcaaattttgagtca 53916072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 59 - 129
Target Start/End: Complemental strand, 1313163 - 1313092
Alignment:
Q  59 cacaaaatatatttgaaacatg-cttttatatttttagcaacaatcttctccatccatcaaattttgagtca 129  Q
    ||||||||||||||||||||   | |||||||||||||||||||| ||||||||||||||||||||||||||    
T  1313163 cacaaaatatatttgaaacaaatcatttatatttttagcaacaatattctccatccatcaaattttgagtca 1313092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 57 - 129
Target Start/End: Complemental strand, 42990035 - 42989962
Alignment:
Q  57 agcacaaaatatatttgaaacatgctttt-atatttttagcaacaatcttctccatccatcaaattttgagtca 129  Q
    |||| |||||||||||||||||   |||| ||||||||||||||||| ||||||||||||||||||||||||||    
T  42990035 agcaaaaaatatatttgaaacaaattttttatatttttagcaacaatattctccatccatcaaattttgagtca 42989962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 57 - 123
Target Start/End: Original strand, 27636129 - 27636196
Alignment:
Q  57 agcacaaaatatatttgaaac-atgcttttatatttttagcaacaatcttctccatccatcaaatttt 123  Q
    ||||||||||||||||||||| |   ||||||||||||||||||||| ||||||||||||||||||||    
T  27636129 agcacaaaatatatttgaaactaatattttatatttttagcaacaatattctccatccatcaaatttt 27636196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 33 - 107
Target Start/End: Original strand, 54287552 - 54287627
Alignment:
Q  33 tattttcagcaacaatcttttgaaagcacaaaatatatttgaaac-atgcttttatatttttagcaacaatcttct 107  Q
    |||||||| || |||||||||| |||||| ||||||||||||||| |  |||||||||||||||||||||||||||    
T  54287552 tattttcaacagcaatcttttggaagcacgaaatatatttgaaacaaatcttttatatttttagcaacaatcttct 54287627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 57 - 129
Target Start/End: Original strand, 4104400 - 4104473
Alignment:
Q  57 agcacaaaatatatttgaaacatg-cttttatatttttagcaacaatcttctccatccatcaaattttgagtca 129  Q
    |||| ||| |||||||||||||   |||||||||||||||||||||| |||| | |||||||||||||||||||    
T  4104400 agcataaagtatatttgaaacaaatcttttatatttttagcaacaatattcttcttccatcaaattttgagtca 4104473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 81 - 129
Target Start/End: Complemental strand, 6561671 - 6561623
Alignment:
Q  81 cttttatatttttagcaacaatcttctccatccatcaaattttgagtca 129  Q
    |||||||||||||||||||||| |||| |||||||||||||| ||||||    
T  6561671 cttttatatttttagcaacaatattcttcatccatcaaatttcgagtca 6561623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 66; Significance: 5e-29; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 12 - 135
Target Start/End: Original strand, 41303504 - 41303629
Alignment:
Q  12 tatatctattgtacataattttattttcagcaacaatcttttgaaagcacaaaatatatttgaaac-atgcttttata-tttttagcaacaatcttctcc 109  Q
    ||||| || ||| ||||| | ||||||||||||||||||| || |||||||||||||||||||||| |  |||||||| ||||||||||||||||||| |    
T  41303504 tatatttactgtccataaatatattttcagcaacaatcttatggaagcacaaaatatatttgaaacaaatcttttatattttttagcaacaatcttcttc 41303603  T
Q  110 atccatcaaattttgagtcaatttca 135  Q
    |||||||||||| |||||||||||||    
T  41303604 atccatcaaattctgagtcaatttca 41303629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 10 - 136
Target Start/End: Complemental strand, 15693702 - 15693576
Alignment:
Q  10 aatatatctattgtacataattttattttcagcaacaatcttttgaaagcacaaaatatatttgaaacatgcttttatatttttagcaacaatcttctcc 109  Q
    ||||||| |||||  ||||| | |||||||||||||||  ||||| |||||||||||||||||||||||    |||||||||||||||||||| || | |    
T  15693702 aatatatttattgcccataaatatattttcagcaacaagtttttggaagcacaaaatatatttgaaacaaatctttatatttttagcaacaatattattc 15693603  T
Q  110 atccatcaaattttgagtcaatttcaa 136  Q
    |||||||||||||| ||||||||||||    
T  15693602 atccatcaaattttaagtcaatttcaa 15693576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 57 - 129
Target Start/End: Original strand, 42924011 - 42924084
Alignment:
Q  57 agcacaaaatatatttgaaacatg-cttttatatttttagcaacaatcttctccatccatcaaattttgagtca 129  Q
    ||||||||||||||||||||||   |||||||||||||||||||||| ||||||||||||||||||||||||||    
T  42924011 agcacaaaatatatttgaaacaaatcttttatatttttagcaacaatattctccatccatcaaattttgagtca 42924084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 33 - 136
Target Start/End: Original strand, 41304874 - 41304971
Alignment:
Q  33 tattttcagcaacaatcttttgaaagcacaaaatatatttgaaacatgcttttatatttttagcaacaatcttctccatccatcaaattttgagtcaatt 132  Q
    |||| |||||||||||||| || ||||||||||||||||||| | || ||||||||||||||     |||||||| ||||||||||||||||||||||||    
T  41304874 tattgtcagcaacaatcttctggaagcacaaaatatatttgacaaat-cttttatattttta-----aatcttcttcatccatcaaattttgagtcaatt 41304967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 10 - 136
Target Start/End: Complemental strand, 39287004 - 39286881
Alignment:
Q  10 aatatatctattgtacataattttattttcagcaacaatcttttgaaagcacaaaatatatttgaaac-atgcttttatatttttagcaacaatcttctc 108  Q
    ||||||| |||||| ||||| | |||||| |||||||||||| || || || |||||||||||||||| |  | ||||||||||||||||||||||        
T  39287004 aatatatttattgtccataaatatattttaagcaacaatcttctggaatcataaaatatatttgaaacaaatcatttatatttttagcaacaatct---- 39286909  T
Q  109 catccatcaaattttgagtcaatttcaa 136  Q
    ||||||||||||||||| ||||||||||    
T  39286908 catccatcaaattttgaatcaatttcaa 39286881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 57 - 129
Target Start/End: Original strand, 23452746 - 23452819
Alignment:
Q  57 agcacaaaatatatttgaaacatg-cttttatatttttagcaacaatcttctccatccatcaaattttgagtca 129  Q
    |||| |||||||||||||||||   |||||||||||||||||||||| ||||||||||||||||||||||||||    
T  23452746 agcataaaatatatttgaaacaaatcttttatatttttagcaacaatattctccatccatcaaattttgagtca 23452819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 57 - 129
Target Start/End: Original strand, 35216101 - 35216174
Alignment:
Q  57 agcacaaaatatatttgaaacatg-cttttatatttttagcaacaatcttctccatccatcaaattttgagtca 129  Q
    ||||||||||||||||||||||   |||||||||||||||||||||| |||| |||||||||||||||||||||    
T  35216101 agcacaaaatatatttgaaacaaatcttttatatttttagcaacaatattcttcatccatcaaattttgagtca 35216174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 57 - 129
Target Start/End: Original strand, 35218482 - 35218555
Alignment:
Q  57 agcacaaaatatatttgaaacatg-cttttatatttttagcaacaatcttctccatccatcaaattttgagtca 129  Q
    ||||||||||||||||||||||   |||||||||||||||||||||| |||| |||||||||||||||||||||    
T  35218482 agcacaaaatatatttgaaacaaatcttttatatttttagcaacaatattcttcatccatcaaattttgagtca 35218555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 57 - 129
Target Start/End: Original strand, 27583824 - 27583897
Alignment:
Q  57 agcacaaaatatatttgaaacatg-cttttatatttttagcaacaatcttctccatccatcaaattttgagtca 129  Q
    ||||||||||||||||||||||   |||||||||||||||||||||| |||| ||||||||||| |||||||||    
T  27583824 agcacaaaatatatttgaaacaaatcttttatatttttagcaacaatattcttcatccatcaaaatttgagtca 27583897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 60 - 136
Target Start/End: Original strand, 28568670 - 28568747
Alignment:
Q  60 acaaaatatatttgaaacatg-cttttatatttttagcaacaatcttctccatccatcaaattttgagtcaatttcaa 136  Q
    |||||||||||||||||||   |||||||| ||||||||||||| |||| |||| |||||||||||||||||||||||    
T  28568670 acaaaatatatttgaaacaaatcttttatagttttagcaacaatattcttcatctatcaaattttgagtcaatttcaa 28568747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 57 - 129
Target Start/End: Complemental strand, 42452532 - 42452459
Alignment:
Q  57 agcacaaaatatatttgaaacatg-cttttatatttttagcaacaatcttctccatccatcaaattttgagtca 129  Q
    ||||||||||||||||||||||   |||||||||||||||||||||| |||| ||||||||||||||| |||||    
T  42452532 agcacaaaatatatttgaaacaaatcttttatatttttagcaacaatattcttcatccatcaaattttaagtca 42452459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 65 - 136
Target Start/End: Complemental strand, 28568411 - 28568339
Alignment:
Q  65 atatatttgaaacatg-cttttatatttttagcaacaatcttctccatccatcaaattttgagtcaatttcaa 136  Q
    ||||||||||||||   |||||||||||||| ||||||| |||| ||||||||||||||||||||||||||||    
T  28568411 atatatttgaaacaaatcttttatatttttaacaacaatattcttcatccatcaaattttgagtcaatttcaa 28568339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 59 - 129
Target Start/End: Original strand, 27136424 - 27136495
Alignment:
Q  59 cacaaaatatatttgaaacatg-cttttatatttttagcaacaatcttctccatccatcaaattttgagtca 129  Q
    ||||||||||||||||||||   ||||||||||||||||| |||| |||| |||||||||||||||||||||    
T  27136424 cacaaaatatatttgaaacaaatcttttatatttttagcaccaatattcttcatccatcaaattttgagtca 27136495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 81 - 139
Target Start/End: Complemental strand, 7502627 - 7502569
Alignment:
Q  81 cttttatatttttagcaacaatcttctccatccatcaaattttgagtcaatttcaatag 139  Q
    |||||||| ||| |||||||||||||| |||||||||||||||||| ||||||||||||    
T  7502627 cttttatactttgagcaacaatcttcttcatccatcaaattttgagacaatttcaatag 7502569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 57 - 129
Target Start/End: Original strand, 34575620 - 34575693
Alignment:
Q  57 agcacaaaatatatttgaaacatg-cttttatatttttagcaacaatcttctccatccatcaaattttgagtca 129  Q
    ||||||||||||||||  ||||   |||||||||||||||||||||| |||| |||||||||||||||||||||    
T  34575620 agcacaaaatatatttagaacaaatcttttatatttttagcaacaatattcttcatccatcaaattttgagtca 34575693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 56; Significance: 4e-23; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 33 - 136
Target Start/End: Original strand, 13986278 - 13986381
Alignment:
Q  33 tattttcagcaacaatcttttgaaagcacaaaatatatttgaaacatgcttttatatttttagcaacaatcttctccatccatcaaattttgagtcaatt 132  Q
    |||||||| |||||||||| |  || |||||||||||||| |||||    ||||||||||||||||||||||||| ||||||| ||||||||||||||||    
T  13986278 tattttcaacaacaatcttctagaaccacaaaatatatttaaaacaaatctttatatttttagcaacaatcttcttcatccataaaattttgagtcaatt 13986377  T
Q  133 tcaa 136  Q
    ||||    
T  13986378 tcaa 13986381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 57 - 129
Target Start/End: Original strand, 3265669 - 3265742
Alignment:
Q  57 agcacaaaatatatttgaaacatg-cttttatatttttagcaacaatcttctccatccatcaaattttgagtca 129  Q
    ||||||||||||||||||||||   |||||||||||||||||||||| ||||||||||||||||||||||||||    
T  3265669 agcacaaaatatatttgaaacaaatcttttatatttttagcaacaatattctccatccatcaaattttgagtca 3265742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 57 - 129
Target Start/End: Complemental strand, 3873833 - 3873760
Alignment:
Q  57 agcacaaaatatatttgaaacatg-cttttatatttttagcaacaatcttctccatccatcaaattttgagtca 129  Q
    ||||||||||||||||||||||   |||||||||||||||||||||| ||||||||||||||||||||||||||    
T  3873833 agcacaaaatatatttgaaacaaatcttttatatttttagcaacaatattctccatccatcaaattttgagtca 3873760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 57 - 129
Target Start/End: Complemental strand, 32339177 - 32339104
Alignment:
Q  57 agcacaaaatatatttgaaacatg-cttttatatttttagcaacaatcttctccatccatcaaattttgagtca 129  Q
    ||||||||||||||||||||||   |||||||||||||||||||||| ||||||||||||||||||||||||||    
T  32339177 agcacaaaatatatttgaaacaaatcttttatatttttagcaacaatattctccatccatcaaattttgagtca 32339104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 57 - 129
Target Start/End: Complemental strand, 43529954 - 43529881
Alignment:
Q  57 agcacaaaatatatttgaaacatg-cttttatatttttagcaacaatcttctccatccatcaaattttgagtca 129  Q
    ||||||||||||||||||||||   |||||||||||||||||||||| ||||||||||||||||||||||||||    
T  43529954 agcacaaaatatatttgaaacaaatcttttatatttttagcaacaatattctccatccatcaaattttgagtca 43529881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 59 - 129
Target Start/End: Complemental strand, 15809043 - 15808972
Alignment:
Q  59 cacaaaatatatttgaaacatg-cttttatatttttagcaacaatcttctccatccatcaaattttgagtca 129  Q
    ||||||||||||||||||||   |||||||||||||||||||||| ||||||||||||||||||||||||||    
T  15809043 cacaaaatatatttgaaacaaatcttttatatttttagcaacaatattctccatccatcaaattttgagtca 15808972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 57 - 129
Target Start/End: Original strand, 28283730 - 28283803
Alignment:
Q  57 agcacaaaatatatttgaaacatg-cttttatatttttagcaacaatcttctccatccatcaaattttgagtca 129  Q
    ||||||||||||||||||||||   |||||||||||||||||| ||| ||||||||||||||||||||||||||    
T  28283730 agcacaaaatatatttgaaacaaatcttttatatttttagcaaaaatattctccatccatcaaattttgagtca 28283803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 81 - 129
Target Start/End: Complemental strand, 41384551 - 41384503
Alignment:
Q  81 cttttatatttttagcaacaatcttctccatccatcaaattttgagtca 129  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||    
T  41384551 cttttatatttttagcaacaatattctccatccatcaaattttgagtca 41384503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 57 - 127
Target Start/End: Complemental strand, 608553 - 608482
Alignment:
Q  57 agcacaaaatatatttgaaacatg-cttttatatttttagcaacaatcttctccatccatcaaattttgagt 127  Q
    ||||||||||||||||||||||   |||||||||||||||||||||| |||| | |||||||||||||||||    
T  608553 agcacaaaatatatttgaaacaaatcttttatatttttagcaacaatattcttcttccatcaaattttgagt 608482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 81 - 129
Target Start/End: Complemental strand, 41382477 - 41382429
Alignment:
Q  81 cttttatatttttagcaacaatcttctccatccatcaaattttgagtca 129  Q
    |||||||||||||| ||||||| ||||||||||||||||||||||||||    
T  41382477 cttttatatttttaacaacaatattctccatccatcaaattttgagtca 41382429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 85 - 135
Target Start/End: Original strand, 11701435 - 11701485
Alignment:
Q  85 tatatttttagcaacaatcttctccatccatcaaattttgagtcaatttca 135  Q
    |||||||| |||||||||||||| | |||||||||||||||||||||||||    
T  11701435 tatattttcagcaacaatcttcttcgtccatcaaattttgagtcaatttca 11701485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 38 - 136
Target Start/End: Original strand, 30679163 - 30679263
Alignment:
Q  38 tcagcaacaatcttttgaaagcaca--aaatatatttgaaacatg-cttttatatttttagcaacaatcttctccatccatcaaattttgagtcaatttc 134  Q
    |||||||||||||| || |||||||  |||||||| | |||||   ||||| |||||||| ||||| | |||| ||||||||||||||||||||||||||    
T  30679163 tcagcaacaatcttctggaagcacacaaaatatatctaaaacaaatcttttttatttttaccaaca-tattcttcatccatcaaattttgagtcaatttc 30679261  T
Q  135 aa 136  Q
    ||    
T  30679262 aa 30679263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 25 - 73
Target Start/End: Complemental strand, 21006608 - 21006560
Alignment:
Q  25 cataattttattttcagcaacaatcttttgaaagcacaaaatatatttg 73  Q
    ||||||| |||||||| ||||||||||||  ||||||||||||||||||    
T  21006608 cataattatattttcaacaacaatcttttagaagcacaaaatatatttg 21006560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 56; Significance: 4e-23; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 46 - 136
Target Start/End: Original strand, 5779133 - 5779224
Alignment:
Q  46 aatcttttgaaagcacaaaatatatttgaaacatg-cttttatatttttagcaacaatcttctccatccatcaaattttgagtcaatttcaa 136  Q
    |||||| ||||||||||||||||||||||||||   |||||||||||||||||| |||||||| |||| |||||||||| ||||||||||||    
T  5779133 aatcttctgaaagcacaaaatatatttgaaacaaatcttttatatttttagcaataatcttcttcatctatcaaattttaagtcaatttcaa 5779224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 57 - 129
Target Start/End: Complemental strand, 25803790 - 25803717
Alignment:
Q  57 agcacaaaatatatttgaaacatg-cttttatatttttagcaacaatcttctccatccatcaaattttgagtca 129  Q
    ||||||||||||||||||||||   |||||||||||||||||||||| ||||||||||||||||||||||||||    
T  25803790 agcacaaaatatatttgaaacaaatcttttatatttttagcaacaatattctccatccatcaaattttgagtca 25803717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 57 - 129
Target Start/End: Complemental strand, 27912302 - 27912229
Alignment:
Q  57 agcacaaaatatatttgaaacatg-cttttatatttttagcaacaatcttctccatccatcaaattttgagtca 129  Q
    ||||||||||||||||||||||   |||||||||||||||||||||| ||||||||||||||||||||||||||    
T  27912302 agcacaaaatatatttgaaacaaatcttttatatttttagcaacaatattctccatccatcaaattttgagtca 27912229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 59 - 129
Target Start/End: Complemental strand, 18596407 - 18596336
Alignment:
Q  59 cacaaaatatatttgaaacatg-cttttatatttttagcaacaatcttctccatccatcaaattttgagtca 129  Q
    ||||||||||||||||||||   |||||||||||||||||||||| ||||||||||||||||||||||||||    
T  18596407 cacaaaatatatttgaaacaaatcttttatatttttagcaacaatattctccatccatcaaattttgagtca 18596336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 57 - 129
Target Start/End: Complemental strand, 15552008 - 15551935
Alignment:
Q  57 agcacaaaatatatttgaaacatg-cttttatatttttagcaacaatcttctccatccatcaaattttgagtca 129  Q
    ||||||| ||||||||||||||   |||||||||||||||||||||| ||||||||||||||||||||||||||    
T  15552008 agcacaatatatatttgaaacaaatcttttatatttttagcaacaatattctccatccatcaaattttgagtca 15551935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 57 - 129
Target Start/End: Complemental strand, 18468781 - 18468708
Alignment:
Q  57 agcacaaaatatatttgaaacatg-cttttatatttttagcaacaatcttctccatccatcaaattttgagtca 129  Q
    ||||||||||||||||||||||   |||||||||||||||||| ||| ||||||||||||||||||||||||||    
T  18468781 agcacaaaatatatttgaaacaaatcttttatatttttagcaaaaatattctccatccatcaaattttgagtca 18468708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 57 - 129
Target Start/End: Original strand, 26098758 - 26098831
Alignment:
Q  57 agcacaaaatatatttgaaacatg-cttttatatttttagcaacaatcttctccatccatcaaattttgagtca 129  Q
    ||||||||||||||||||||||   |||||||||||||||||| ||| ||||||||||||||||||||||||||    
T  26098758 agcacaaaatatatttgaaacaaatcttttatatttttagcaataatattctccatccatcaaattttgagtca 26098831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 57 - 129
Target Start/End: Complemental strand, 27910218 - 27910145
Alignment:
Q  57 agcacaaaatatatttgaaacatg-cttttatatttttagcaacaatcttctccatccatcaaattttgagtca 129  Q
    ||||||||||||||||||||||   |||||||||||||||||| ||| ||||||||||||||||||||||||||    
T  27910218 agcacaaaatatatttgaaacaaatcttttatatttttagcaataatattctccatccatcaaattttgagtca 27910145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 60 - 129
Target Start/End: Complemental strand, 26097501 - 26097431
Alignment:
Q  60 acaaaatatatttgaaacatgctttt-atatttttagcaacaatcttctccatccatcaaattttgagtca 129  Q
    |||||||||||||||||||   |||| ||||||||||||||||| ||||||||||||||||||||||||||    
T  26097501 acaaaatatatttgaaacaaattttttatatttttagcaacaatattctccatccatcaaattttgagtca 26097431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 57 - 129
Target Start/End: Original strand, 3373547 - 3373620
Alignment:
Q  57 agcacaaaatatatttgaaacatg-cttttatatttttagcaacaatcttctccatccatcaaattttgagtca 129  Q
    ||||||| ||||||||||||||   |||||||||||||||||||||| |||||||||||||||||| |||||||    
T  3373547 agcacaatatatatttgaaacaaatcttttatatttttagcaacaatattctccatccatcaaattctgagtca 3373620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 57 - 129
Target Start/End: Original strand, 17415817 - 17415890
Alignment:
Q  57 agcacaaaatatatttgaaacatg-cttttatatttttagcaacaatcttctccatccatcaaattttgagtca 129  Q
    |||| |||||||||||||||||   |||||||||||||||||||||| |||| |||||||||||||||||||||    
T  17415817 agcaaaaaatatatttgaaacaaatcttttatatttttagcaacaatattcttcatccatcaaattttgagtca 17415890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 57 - 129
Target Start/End: Original strand, 18509824 - 18509897
Alignment:
Q  57 agcacaaaatatatttgaaacatg-cttttatatttttagcaacaatcttctccatccatcaaattttgagtca 129  Q
    ||||||||||||||| |||| |   |||||||||||||||||||||| ||||||||||||||||||||||||||    
T  18509824 agcacaaaatatattcgaaataaatcttttatatttttagcaacaatattctccatccatcaaattttgagtca 18509897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 57 - 129
Target Start/End: Original strand, 18511719 - 18511792
Alignment:
Q  57 agcacaaaatatatttgaaacatg-cttttatatttttagcaacaatcttctccatccatcaaattttgagtca 129  Q
    ||||||||||||||| ||||||   |||||||||||||||||||||| |||| |||||||||||||||||||||    
T  18511719 agcacaaaatatattcgaaacaaatcttttatatttttagcaacaatattcttcatccatcaaattttgagtca 18511792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 57 - 127
Target Start/End: Complemental strand, 21288612 - 21288541
Alignment:
Q  57 agcacaaaatatatttgaaacatg-cttttatatttttagcaacaatcttctccatccatcaaattttgagt 127  Q
    |||||||||||||||| |||||   ||||| |||||||||||||||| ||||||||||||||||||||||||    
T  21288612 agcacaaaatatattttaaacaaatcttttttatttttagcaacaatattctccatccatcaaattttgagt 21288541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 85 - 129
Target Start/End: Complemental strand, 15143274 - 15143230
Alignment:
Q  85 tatatttttagcaacaatcttctccatccatcaaattttgagtca 129  Q
    |||||||||||||||||| ||||||||||||||||||||||||||    
T  15143274 tatatttttagcaacaatattctccatccatcaaattttgagtca 15143230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 85 - 129
Target Start/End: Complemental strand, 18466465 - 18466421
Alignment:
Q  85 tatatttttagcaacaatcttctccatccatcaaattttgagtca 129  Q
    |||||||||||||||||| ||||||||||||||||||||||||||    
T  18466465 tatatttttagcaacaatattctccatccatcaaattttgagtca 18466421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 57 - 119
Target Start/End: Complemental strand, 10586612 - 10586549
Alignment:
Q  57 agcacaaaatatatttgaaacatg-cttttatatttttagcaacaatcttctccatccatcaaa 119  Q
    ||||||||||||||||||||||   |||||||||||||||||||||| ||| ||||||||||||    
T  10586612 agcacaaaatatatttgaaacaaatcttttatatttttagcaacaatattccccatccatcaaa 10586549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 61 - 129
Target Start/End: Complemental strand, 40221361 - 40221292
Alignment:
Q  61 caaaatatatttgaaacatg-cttttatatttttagcaacaatcttctccatccatcaaattttgagtca 129  Q
    ||||||||||||||||||   |||||||||||||||||||||| |||| |||| || |||||||||||||    
T  40221361 caaaatatatttgaaacaaatcttttatatttttagcaacaatattcttcatcaattaaattttgagtca 40221292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 59 - 129
Target Start/End: Original strand, 6661952 - 6662023
Alignment:
Q  59 cacaaaatatatttgaaacatgc-ttttatatttttagcaacaatcttctccatccatcaaattttgagtca 129  Q
    ||||||||||||||||||||    ||||||||||||||||||||| |||| |||||||||| |||| |||||    
T  6661952 cacaaaatatatttgaaacaaatattttatatttttagcaacaatattcttcatccatcaagttttaagtca 6662023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 85 - 136
Target Start/End: Complemental strand, 32520253 - 32520202
Alignment:
Q  85 tatatttttagcaacaatcttctccatccatcaaattttgagtcaatttcaa 136  Q
    |||||||| |||||||||||||| ||||||||||||||| |||| |||||||    
T  32520253 tatattttcagcaacaatcttcttcatccatcaaattttaagtctatttcaa 32520202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 55; Significance: 2e-22; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 10 - 136
Target Start/End: Complemental strand, 30445351 - 30445222
Alignment:
Q  10 aatatatctattgtacataattttattttcagcaacaatcttttgaaagcacaaaatatatttgaaacatgc-ttttatatttttagcaacaatcttctc 108  Q
    ||||||| |||||| ||||| | |||||||||||||||| || || |||||||||||||||||||||||    |||||||||| |||||||||| ||||     
T  30445351 aatatatttattgttcataaatatattttcagcaacaatattctggaagcacaaaatatatttgaaacaaatattttatatttctagcaacaatattctt 30445252  T
Q  109 catccatcaaa--ttttgagtcaatttcaa 136  Q
    ||||||||| |  |||||||||||||||||    
T  30445251 catccatcatagattttgagtcaatttcaa 30445222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 57 - 129
Target Start/End: Original strand, 30035113 - 30035186
Alignment:
Q  57 agcacaaaatatatttgaaacatg-cttttatatttttagcaacaatcttctccatccatcaaattttgagtca 129  Q
    ||||||||||||||||||||||   |||||||||||||||||||||| ||||||||||||||||||||||||||    
T  30035113 agcacaaaatatatttgaaacaaatcttttatatttttagcaacaatattctccatccatcaaattttgagtca 30035186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 20 - 136
Target Start/End: Complemental strand, 30443134 - 30443015
Alignment:
Q  20 ttgtacataattttattttcagcaacaatcttttgaaagcacaaaatatatttgaaac-atgcttttatatttttagcaacaatcttctccatccatc-- 116  Q
    |||| ||||| | ||||||||||||||||||| || ||||| |||||||||||||||| |  || ||||||||||| ||||||| |||| ||||||||      
T  30443134 ttgtccataaatatattttcagcaacaatcttctggaagcaaaaaatatatttgaaacaaatctcttatatttttaacaacaatattcttcatccatcat 30443035  T
Q  117 aaattttgagtcaatttcaa 136  Q
    ||||||||||||||||||||    
T  30443034 aaattttgagtcaatttcaa 30443015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 57 - 129
Target Start/End: Original strand, 5275845 - 5275918
Alignment:
Q  57 agcacaaaatatatttgaaacatg-cttttatatttttagcaacaatcttctccatccatcaaattttgagtca 129  Q
    |||||||||||||||||||| |   |||||||||||||||||||||| ||||||||||||||||||||||||||    
T  5275845 agcacaaaatatatttgaaataaatcttttatatttttagcaacaatattctccatccatcaaattttgagtca 5275918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 57 - 129
Target Start/End: Original strand, 2629396 - 2629469
Alignment:
Q  57 agcacaaaatatatttgaaacatg-cttttatatttttagcaacaatcttctccatccatcaaattttgagtca 129  Q
    ||||||||||||||||||||||   |||||||||||||||||||||| |||| | |||||||||||||||||||    
T  2629396 agcacaaaatatatttgaaacaaatcttttatatttttagcaacaatattcttcttccatcaaattttgagtca 2629469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 57 - 129
Target Start/End: Original strand, 12196021 - 12196094
Alignment:
Q  57 agcacaaaatatatttgaaacatg-cttttatatttttagcaacaatcttctccatccatcaaattttgagtca 129  Q
    ||||||| ||||||||||||||   |||||||||||||||||||||| ||||||||||||||| ||||||||||    
T  12196021 agcacaatatatatttgaaacaaatcttttatatttttagcaacaatattctccatccatcaatttttgagtca 12196094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 57 - 129
Target Start/End: Original strand, 26933075 - 26933148
Alignment:
Q  57 agcacaaaatatatttgaaacatg-cttttatatttttagcaacaatcttctccatccatcaaattttgagtca 129  Q
    ||||||| ||||||||||||||   |||||||||||||||||||||| ||||||||||||||| ||||||||||    
T  26933075 agcacaatatatatttgaaacaaatcttttatatttttagcaacaatattctccatccatcaatttttgagtca 26933148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 57 - 129
Target Start/End: Complemental strand, 30967006 - 30966933
Alignment:
Q  57 agcacaaaatatatttgaaacatg-cttttatatttttagcaacaatcttctccatccatcaaattttgagtca 129  Q
    |||||||||||||||||||| |   |||||||||||||||||||||| ||||||||||||||||||| ||||||    
T  30967006 agcacaaaatatatttgaaataaatcttttatatttttagcaacaatattctccatccatcaaatttggagtca 30966933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 82 - 136
Target Start/End: Complemental strand, 12158575 - 12158521
Alignment:
Q  82 ttttatatttttagcaacaatcttctccatccatcaaattttgagtcaatttcaa 136  Q
    |||||||||||||||||||||||||| ||| ||||||||||||| ||||||||||    
T  12158575 ttttatatttttagcaacaatcttcttcattcatcaaattttgactcaatttcaa 12158521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 57 - 129
Target Start/End: Complemental strand, 18317834 - 18317761
Alignment:
Q  57 agcacaaaatatatttgaaacatg-cttttatatttttagcaacaatcttctccatccatcaaattttgagtca 129  Q
    ||||||||||||||||||||||   |||||||||||||||||||||| |||| | ||| |||||||||||||||    
T  18317834 agcacaaaatatatttgaaacaaatcttttatatttttagcaacaatattcttcttccttcaaattttgagtca 18317761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 57 - 129
Target Start/End: Original strand, 19705082 - 19705155
Alignment:
Q  57 agcacaaaatatatttgaaacatg-cttttatatttttagcaacaatcttctccatccatcaaattttgagtca 129  Q
    |||||||||||| |||||||||   |||||||||||||||||||||| |||| | |||||||||||||||||||    
T  19705082 agcacaaaatatctttgaaacaaatcttttatatttttagcaacaatattcttcttccatcaaattttgagtca 19705155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 57 - 129
Target Start/End: Complemental strand, 20526629 - 20526556
Alignment:
Q  57 agcacaaaatatatttgaaacatg-cttttatatttttagcaacaatcttctccatccatcaaattttgagtca 129  Q
    |||| |||||||||||||||||   |||||||||||||||||||||| |||| || ||||||||||||||||||    
T  20526629 agcataaaatatatttgaaacaaatcttttatatttttagcaacaatattcttcacccatcaaattttgagtca 20526556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 67 - 129
Target Start/End: Complemental strand, 17011851 - 17011789
Alignment:
Q  67 atatttgaaacatgcttttatatttttagcaacaatcttctccatccatcaaattttgagtca 129  Q
    |||||| |||||  |||||||||||||||||| ||| |||| ||||||||||||||| |||||    
T  17011851 atatttaaaacaaacttttatatttttagcaataatattcttcatccatcaaattttaagtca 17011789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 57 - 129
Target Start/End: Original strand, 22858453 - 22858526
Alignment:
Q  57 agcacaaaatatatttgaaacatg-cttttatatttttagcaacaatcttctccatccatcaaattttgagtca 129  Q
    |||||||| ||||||| |||||   ||||||||||||||  |||||| |||| |||||||||||||||||||||    
T  22858453 agcacaaagtatatttaaaacaaatcttttatatttttattaacaatattcttcatccatcaaattttgagtca 22858526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 72
Target Start/End: Original strand, 6872227 - 6872280
Alignment:
Q  19 attgtacataattttattttcagcaacaatcttttgaaagcacaaaatatattt 72  Q
    ||||| ||||||| |||||| ||||||||||||||  |||||| ||||||||||    
T  6872227 attgtccataattatatttttagcaacaatcttttagaagcacgaaatatattt 6872280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 10 - 70
Target Start/End: Original strand, 13484324 - 13484384
Alignment:
Q  10 aatatatctattgtacataattttattttcagcaacaatcttttgaaagcacaaaatatat 70  Q
    |||||||||  ||| ||||| | |||||||||||||||||||   ||||||||||||||||    
T  13484324 aatatatctgatgtccataaatatattttcagcaacaatcttccaaaagcacaaaatatat 13484384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1674 (Bit Score: 54; Significance: 7e-22; HSPs: 1)
Name: scaffold1674
Description:

Target: scaffold1674; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 57 - 129
Target Start/End: Original strand, 12 - 85
Alignment:
Q  57 agcacaaaatatatttgaaacatg-cttttatatttttagcaacaatcttctccatccatcaaattttgagtca 129  Q
    ||||||||||||||||||||||   |||||||||||||||||||||| ||||||||||||||||||||||||||    
T  12 agcacaaaatatatttgaaacaaatcttttatatttttagcaacaatattctccatccatcaaattttgagtca 85  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0468 (Bit Score: 54; Significance: 7e-22; HSPs: 1)
Name: scaffold0468
Description:

Target: scaffold0468; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 57 - 129
Target Start/End: Original strand, 2102 - 2175
Alignment:
Q  57 agcacaaaatatatttgaaacatg-cttttatatttttagcaacaatcttctccatccatcaaattttgagtca 129  Q
    ||||||||||||||||||||||   |||||||||||||||||||||| ||||||||||||||||||||||||||    
T  2102 agcacaaaatatatttgaaacaaatcttttatatttttagcaacaatattctccatccatcaaattttgagtca 2175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 54; Significance: 7e-22; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 57 - 129
Target Start/End: Original strand, 22135136 - 22135209
Alignment:
Q  57 agcacaaaatatatttgaaacatg-cttttatatttttagcaacaatcttctccatccatcaaattttgagtca 129  Q
    ||||||||||||||||||||||   |||||||||||||||||||||| ||||||||||||||||||||||||||    
T  22135136 agcacaaaatatatttgaaacaaatcttttatatttttagcaacaatattctccatccatcaaattttgagtca 22135209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 57 - 129
Target Start/End: Complemental strand, 56030272 - 56030199
Alignment:
Q  57 agcacaaaatatatttgaaacatg-cttttatatttttagcaacaatcttctccatccatcaaattttgagtca 129  Q
    ||||||||||||||||||||||   |||||||||||||||||||||| ||||||||||||||||||||||||||    
T  56030272 agcacaaaatatatttgaaacaaatcttttatatttttagcaacaatattctccatccatcaaattttgagtca 56030199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 58 - 129
Target Start/End: Complemental strand, 24348041 - 24347969
Alignment:
Q  58 gcacaaaatatatttgaaacatg-cttttatatttttagcaacaatcttctccatccatcaaattttgagtca 129  Q
    |||||||||||||||||||||   |||||||||||||||||||||| ||||||||||||||||||||||||||    
T  24348041 gcacaaaatatatttgaaacaaatcttttatatttttagcaacaatattctccatccatcaaattttgagtca 24347969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 33 - 138
Target Start/End: Original strand, 38209162 - 38209268
Alignment:
Q  33 tattttcagcaacaatcttttgaaagcacaaaatatatttgaaacatg-cttttatatttttagcaacaatcttctccatccatcaaattttgagtcaat 131  Q
    |||||||| |||||||||| |  ||||||||||||||||| |||||   |||||||||||||| ||||||| || | |||||||||||||||||||||||    
T  38209162 tattttcaacaacaatcttcttgaagcacaaaatatatttaaaacaaatcttttatatttttaacaacaatatttttcatccatcaaattttgagtcaat 38209261  T
Q  132 ttcaata 138  Q
    || ||||    
T  38209262 tttaata 38209268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 57 - 129
Target Start/End: Complemental strand, 5100826 - 5100753
Alignment:
Q  57 agcacaaaatatatttgaaacatg-cttttatatttttagcaacaatcttctccatccatcaaattttgagtca 129  Q
    |||||||||||||||| |||||   |||||||||||||||||||||| ||||||||||||||||||||||||||    
T  5100826 agcacaaaatatatttaaaacaaatcttttatatttttagcaacaatattctccatccatcaaattttgagtca 5100753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 57 - 125
Target Start/End: Original strand, 22132904 - 22132973
Alignment:
Q  57 agcacaaaatatatttgaaacatg-cttttatatttttagcaacaatcttctccatccatcaaattttga 125  Q
    ||||||||||||||||||||||   |||||||||||||||||||||| ||||||||||||||||||||||    
T  22132904 agcacaaaatatatttgaaacaaatcttttatatttttagcaacaatattctccatccatcaaattttga 22132973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 57 - 129
Target Start/End: Original strand, 47211225 - 47211298
Alignment:
Q  57 agcacaaaatatatttgaaacatg-cttttatatttttagcaacaatcttctccatccatcaaattttgagtca 129  Q
    ||||||||||||||||||||||   |||||||||||||||||||||| |||||||||||||||||||| |||||    
T  47211225 agcacaaaatatatttgaaacaaatcttttatatttttagcaacaatattctccatccatcaaattttaagtca 47211298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 59 - 129
Target Start/End: Original strand, 14787940 - 14788011
Alignment:
Q  59 cacaaaatatatttgaaacatg-cttttatatttttagcaacaatcttctccatccatcaaattttgagtca 129  Q
    ||||||||||||||||||||   |||||||||||||||||||| | ||||||||||||||||||||||||||    
T  14787940 cacaaaatatatttgaaacaaatcttttatatttttagcaacattattctccatccatcaaattttgagtca 14788011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 63 - 129
Target Start/End: Original strand, 38890624 - 38890691
Alignment:
Q  63 aaatatatttgaaacatg-cttttatatttttagcaacaatcttctccatccatcaaattttgagtca 129  Q
    ||||||||||||||||   |||||||||||||||||||||| ||||||||||||||||||||||||||    
T  38890624 aaatatatttgaaacaaatcttttatatttttagcaacaatattctccatccatcaaattttgagtca 38890691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 57 - 129
Target Start/End: Original strand, 44600345 - 44600418
Alignment:
Q  57 agcacaaaatatatttgaaacatg-cttttatatttttagcaacaatcttctccatccatcaaattttgagtca 129  Q
    ||||||| ||||||||||||||   |||||||||||||||||||||| ||||||||||||||| ||||||||||    
T  44600345 agcacaatatatatttgaaacaaatcttttatatttttagcaacaatattctccatccatcaatttttgagtca 44600418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 33 - 136
Target Start/End: Original strand, 5516742 - 5516846
Alignment:
Q  33 tattttcagcaacaatcttttgaaagcacaaaatatatttgaaaca-tgcttttatatttttagcaacaatcttctccatccatcaaattttgagtcaat 131  Q
    |||||| |||||| |||||   ||| || ||||||||||||||||| | | |||||||||||||||||||| |||||||| ||||||||||| | |||||    
T  5516742 tatttttagcaacgatcttccaaaaacataaaatatatttgaaacaattcatttatatttttagcaacaatattctccattcatcaaattttaaatcaat 5516841  T
Q  132 ttcaa 136  Q
    |||||    
T  5516842 ttcaa 5516846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 57 - 122
Target Start/End: Original strand, 17662743 - 17662809
Alignment:
Q  57 agcacaaaatatatttgaaacatg-cttttatatttttagcaacaatcttctccatccatcaaattt 122  Q
    |||||||||||||||| |||||   |||||||||||||||||||||| |||||||||||||||||||    
T  17662743 agcacaaaatatatttaaaacaaatcttttatatttttagcaacaatattctccatccatcaaattt 17662809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 57 - 123
Target Start/End: Complemental strand, 30136398 - 30136331
Alignment:
Q  57 agcacaaaatatatttgaaacatg-cttttatatttttagcaacaatcttctccatccatcaaatttt 123  Q
    ||||||| ||||||||||||||   |||||||||||||||||||||| |||||||| |||||||||||    
T  30136398 agcacaatatatatttgaaacaaatcttttatatttttagcaacaatattctccattcatcaaatttt 30136331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 57 - 129
Target Start/End: Complemental strand, 10112705 - 10112636
Alignment:
Q  57 agcacaaaatatatttgaaacatgcttttatatttttagcaacaatcttctccatccatcaaattttgagtca 129  Q
    |||||||||||||||||||||   |||||||||||||||||||||| |||| ||| || |||||||| |||||    
T  10112705 agcacaaaatatatttgaaac---cttttatatttttagcaacaatattcttcattcaacaaattttaagtca 10112636  T

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Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 81 - 129
Target Start/End: Original strand, 14789513 - 14789561
Alignment:
Q  81 cttttatatttttagcaacaatcttctccatccatcaaattttgagtca 129  Q
    |||||||||||||||||||| | |||| |||||||||||||||||||||    
T  14789513 cttttatatttttagcaacattattcttcatccatcaaattttgagtca 14789561  T

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Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 10 - 75
Target Start/End: Complemental strand, 10979709 - 10979644
Alignment:
Q  10 aatatatctattgtacataattttattttcagcaacaatcttttgaaagcacaaaatatatttgaa 75  Q
    ||||||| | |||| ||||| | ||||||||||||||||||| |  ||||||||||||||||||||    
T  10979709 aatatatttgttgtccataaatatattttcagcaacaatcttcttgaagcacaaaatatatttgaa 10979644  T

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Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 81 - 129
Target Start/End: Complemental strand, 19322467 - 19322418
Alignment:
Q  81 cttttatatttttagcaacaa-tcttctccatccatcaaattttgagtca 129  Q
    |||||||||||||||||| || | ||||||||||||||||||||||||||    
T  19322467 cttttatatttttagcaaaaaatattctccatccatcaaattttgagtca 19322418  T

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Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 33 - 136
Target Start/End: Original strand, 29609890 - 29609994
Alignment:
Q  33 tattttcagcaacaatcttttgaaagcacaaaatatatttgaaacatg-cttttatatttttagcaacaatcttctccatccatcaaattttgagtcaat 131  Q
    |||||||| |||||||||| |  ||||||||||||||||||||| |   |    ||| ||||||||||||| |||| ||||||||||||||||| | |||    
T  29609890 tattttcatcaacaatcttctagaagcacaaaatatatttgaaaaaaatcaagaatacttttagcaacaatattcttcatccatcaaattttgaattaat 29609989  T
Q  132 ttcaa 136  Q
    |||||    
T  29609990 ttcaa 29609994  T

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Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 33 - 105
Target Start/End: Original strand, 32274325 - 32274396
Alignment:
Q  33 tattttcagcaacaatcttttgaaagcacaaaatatatttgaaacatgcttttatatttttagcaacaatctt 105  Q
    |||||||||||||||| || |  |||||||||||||||||  |||||  |||||||||||||| |||||||||    
T  32274325 tattttcagcaacaattttctagaagcacaaaatatattt-caacatatttttatatttttagtaacaatctt 32274396  T

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Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 10 - 136
Target Start/End: Original strand, 54929147 - 54929274
Alignment:
Q  10 aatatatctattgtacataattttattttcagcaacaatcttttgaaagcaca--aaatatatttgaaacatg-cttttatatttttagcaacaatcttc 106  Q
    ||||||| | |||| ||||| | |||||||||||| ||||||  |||||||||  ||||| |||| || ||   |||||||||||||||||||||| ||     
T  54929147 aatatattttttgtccataaatatattttcagcaataatcttccgaaagcacacaaaatacatttaaatcaaatcttttatatttttagcaacaatatta 54929246  T
Q  107 tccatccatcaaattttgagtcaatttcaa 136  Q
    |   ||||||||||||| ||||||||||||    
T  54929247 t--ttccatcaaattttaagtcaatttcaa 54929274  T

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Target: scaffold0005 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 59 - 129
Target Start/End: Complemental strand, 51790 - 51719
Alignment:
Q  59 cacaaaatatatttgaaacatg-cttttatatttttagcaacaatcttctccatccatcaaattttgagtca 129  Q
    ||||||||||||||||||||   |||||||||||||||||||| | ||||||||||||||||||||||||||    
T  51790 cacaaaatatatttgaaacaaatcttttatatttttagcaacattattctccatccatcaaattttgagtca 51719  T

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Target: scaffold0005; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 81 - 129
Target Start/End: Complemental strand, 50217 - 50169
Alignment:
Q  81 cttttatatttttagcaacaatcttctccatccatcaaattttgagtca 129  Q
    |||||||||||||||||||| | |||| |||||||||||||||||||||    
T  50217 cttttatatttttagcaacattattcttcatccatcaaattttgagtca 50169  T

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Target: scaffold0154 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 57 - 125
Target Start/End: Original strand, 11978 - 12047
Alignment:
Q  57 agcacaaaatatatttgaaacatgctttt-atatttttagcaacaatcttctccatccatcaaattttga 125  Q
    ||||||||||||||||||||||   |||| ||||||||||||||||| ||||||||||||||||||||||    
T  11978 agcacaaaatatatttgaaacaaattttttatatttttagcaacaatattctccatccatcaaattttga 12047  T

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Target: scaffold0511 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0511
Description:

Target: scaffold0511; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 57 - 129
Target Start/End: Complemental strand, 1818 - 1745
Alignment:
Q  57 agcacaaaatatatttgaaacatg-cttttatatttttagcaacaatcttctccatccatcaaattttgagtca 129  Q
    ||||||||||||||||||||||   |||||||||||||||||||||| |||| | ||| |||||||||||||||    
T  1818 agcacaaaatatatttgaaacaaatcttttatatttttagcaacaatattcttcttccttcaaattttgagtca 1745  T

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Target: scaffold0031 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 57 - 129
Target Start/End: Complemental strand, 78966 - 78893
Alignment:
Q  57 agcacaaaatatatttgaaacatg-cttttatatttttagcaacaatcttctccatccatcaaattttgagtca 129  Q
    |||| ||||||||||||| |||   |||||||||||||||||||||| |||||||||||||||||||| |||||    
T  78966 agcagaaaatatatttgagacaaatcttttatatttttagcaacaatattctccatccatcaaattttaagtca 78893  T

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Target: scaffold0474 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0474
Description:

Target: scaffold0474; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 81 - 136
Target Start/End: Complemental strand, 10491 - 10436
Alignment:
Q  81 cttttatatttttagcaacaatcttctccatccatcaaattttgagtcaatttcaa 136  Q
    |||||||||||||| |||||||||| |  |||||||||||||||||||||||||||    
T  10491 cttttatatttttaacaacaatcttttttatccatcaaattttgagtcaatttcaa 10436  T

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Target: scaffold0133 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0133
Description:

Target: scaffold0133; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 57 - 127
Target Start/End: Complemental strand, 4629 - 4558
Alignment:
Q  57 agcacaaaatatatttgaaacatg-cttttatatttttagcaacaatcttctccatccatcaaattttgagt 127  Q
    ||||| ||||||||| ||||||   |||||||||||||||||||||| |||| |||||||||||||||||||    
T  4629 agcacgaaatatattcgaaacaaatcttttatatttttagcaacaatattcttcatccatcaaattttgagt 4558  T

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Target: scaffold0008 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 10 - 141
Target Start/End: Original strand, 57875 - 58007
Alignment:
Q  10 aatatatctattgtacataattttattttcagcaacaatcttttgaaagcaca--aaatatatttgaaacatg-cttttatatttttagcaacaatcttc 106  Q
    ||||||| |||||| ||||  | |||||||| |||||||||| || |||||||  ||| |||| | |||||   |||||||| |||||| ||||||  ||    
T  57875 aatatatttattgttcatacatatattttcaacaacaatcttctggaagcacacaaaaaatatataaaacaaatcttttatacttttagaaacaat--tc 57972  T
Q  107 tccatccatcaaattttgagtcaatttcaatagtt 141  Q
      |||||||||||||||||||||||||||| ||||    
T  57973 atcatccatcaaattttgagtcaatttcaacagtt 58007  T

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