View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12977_low_23 (Length: 416)
Name: NF12977_low_23
Description: NF12977
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12977_low_23 |
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Alignment Details
Target: chr5 (Bit Score: 293; Significance: 1e-164; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 112 - 408
Target Start/End: Original strand, 4305680 - 4305976
Alignment:
| Q |
112 |
caaaacagtatgaatcatcacaacatgacacctatgaattttcaacaacttcctcatctcttcctacaagagattcctattttgggaaactccaggtaca |
211 |
Q |
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| T |
4305680 |
caaaacagtatgaatcatcacaacatgacacctatgaattttcaacaacttcctcatctcttcctacaagagattcctattttgggaaactccaggtgca |
4305779 |
T |
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| Q |
212 |
aacatgttcttttttctacttaacttaacaagttcattaattcataccagtagtatataacatggtcaatttgcattaagttaattgttaaagttgtttt |
311 |
Q |
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| T |
4305780 |
aacatgttcttttttctacttaacttaacaagttcattaattcataccagtagtatataacatggtcaatttgcattaagttaattgttaaagttgtttt |
4305879 |
T |
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| Q |
312 |
attacagtgtaatgaaggctaatattaagaaggaagagcctaaatgtgcacaaatgacaatcttgtatgatgggaaagtaattgtgtttgatgatgt |
408 |
Q |
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| T |
4305880 |
attacagtgtaatgaaggctaatattaagaaggaagagcctaaatgtgcacaaatgacaatcttgtatgatgggaaagtaattgtgtttgatgatgt |
4305976 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 250 - 408
Target Start/End: Original strand, 4311172 - 4311333
Alignment:
| Q |
250 |
aattcataccagtagtatataacatggtcaatttgcattaagttaattgttaaagttgttt---tattacagtgtaatgaaggctaatattaagaaggaa |
346 |
Q |
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| T |
4311172 |
aattcatactagaagtatatagcatggtcaatttgcattaaattaattgttaatgttgtttaattattacagtgtaatgaaggctaatattaagaaggag |
4311271 |
T |
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| Q |
347 |
gagcctaaatgtgcacaaatgacaatcttgtatgatgggaaagtaattgtgtttgatgatgt |
408 |
Q |
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| T |
4311272 |
gagcctagttgtgcacaaatgacaatcttttatgatgggaaagtaattgtgtttgatgatgt |
4311333 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 267 - 406
Target Start/End: Original strand, 4300774 - 4300913
Alignment:
| Q |
267 |
tataacatggtcaatttgcattaagttaattgttaaagttgttttattacagtgtaatgaaggctaatattaagaaggaagagcctaaatgtgcacaaat |
366 |
Q |
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|||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||| | ||||| |
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| T |
4300774 |
tataacatggtcaatttgcattaaattaattgttaatgttgttttattacagtgtaatgaaggctaatattatcaaggaagagcctaaatgtacccaaat |
4300873 |
T |
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| Q |
367 |
gacaatcttgtatgatgggaaagtaattgtgtttgatgat |
406 |
Q |
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| T |
4300874 |
gacaattttttatgatgggaaaataattgtgtttgatgat |
4300913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 121 - 232
Target Start/End: Original strand, 4311019 - 4311130
Alignment:
| Q |
121 |
atgaatcatcacaacatgacacctatgaattttcaacaacttcctcatctcttcctacaagagattcctattttgggaaactccaggtacaaacatgttc |
220 |
Q |
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| T |
4311019 |
atgaatcatcacaatataacacctatgaattttcaacaatttcctcatctcttcctacaagagattcctattttgggaaactccaggtacatacatgttc |
4311118 |
T |
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| Q |
221 |
ttttttctactt |
232 |
Q |
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|||||||||||| |
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| T |
4311119 |
ttttttctactt |
4311130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 20 - 114
Target Start/End: Original strand, 4305560 - 4305652
Alignment:
| Q |
20 |
tttagctcctcacatgcataaatacaatatactatagtagtactagtaatagtataaagcttccaccgctctctcatcactctcactttcttcaa |
114 |
Q |
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| T |
4305560 |
tttagctcctcacatgcataaatacaatatacta--gtagtactagtaatagtataaagcttccaccgctctctcttcactctcactttcttcaa |
4305652 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 341 - 406
Target Start/End: Original strand, 4294311 - 4294376
Alignment:
| Q |
341 |
aaggaagagcctaaatgtgcacaaatgacaatcttgtatgatgggaaagtaattgtgtttgatgat |
406 |
Q |
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||||||||||||| |||||||||||||||||| || |||||||||||||||||||||||||||||| |
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| T |
4294311 |
aaggaagagcctagatgtgcacaaatgacaattttttatgatgggaaagtaattgtgtttgatgat |
4294376 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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