View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12977_low_25 (Length: 405)
Name: NF12977_low_25
Description: NF12977
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12977_low_25 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 224; Significance: 1e-123; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 122 - 377
Target Start/End: Complemental strand, 5022266 - 5022011
Alignment:
| Q |
122 |
gaatacacaataccagcaggaacacaagttcttgtgaatgcatgggcaattggaagatggattattttccatcttttactatgagtgcctatcaattatt |
221 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5022266 |
gaatgcacaataccagcaggaacacaagttcttgtgaatgcatgggcaattggaagatggattattttccatcttttactatgagtgcctatcaattatt |
5022167 |
T |
|
| Q |
222 |
gttggtgctattataccgtgttttgctgcttttgggagtgcgcggcgtggactagagggtgtgannnnnnnngctggtggattcttttgtcccctttctt |
321 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
5022166 |
gttggtgctattatactgtgttttgctgcttttgggagtgcgcggcgtggactagagggtgtgattttttttgctggtggattcttttgtcccctttctt |
5022067 |
T |
|
| Q |
322 |
cttggccacatgaatggattcgagtatgctgacaccaagaaagccatcaacatgtg |
377 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5022066 |
cttggccacatgaatggattcgagtatgctgacaccaagaaagccatcaacatgtg |
5022011 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 19 - 95
Target Start/End: Complemental strand, 5022324 - 5022248
Alignment:
| Q |
19 |
gatgaagtggatcttcaagaattgaaatttctaaaagaagtgattaaagaaaccttaagaatgcacaataccagcag |
95 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5022324 |
gatgaagtggatcttcaagaattgaaatttctaaaagaagtgattaaagaaaccttaagaatgcacaataccagcag |
5022248 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 296 - 377
Target Start/End: Complemental strand, 23712157 - 23712071
Alignment:
| Q |
296 |
tggtggattcttttgtcccctttcttcttggccacatgaatggattcgagt-----atgctgacaccaagaaagccatcaacatgtg |
377 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||| | ||||| || |||| ||||||||||||||||| |
|
|
| T |
23712157 |
tggtggattcttttgtcccctttcttcttggccacgtgaatggattcgattcgattatgctcactccaacaaagccatcaacatgtg |
23712071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 178 - 222
Target Start/End: Complemental strand, 23712275 - 23712231
Alignment:
| Q |
178 |
atggattattttccatcttttactatgagtgcctatcaattattg |
222 |
Q |
| |
|
|||||||||||||||| |||||||||||||||| ||||||||||| |
|
|
| T |
23712275 |
atggattattttccatattttactatgagtgcccatcaattattg |
23712231 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 61; Significance: 4e-26; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 94 - 178
Target Start/End: Original strand, 41654553 - 41654637
Alignment:
| Q |
94 |
agagtgtattgaaacttgtgagattagtgaatacacaataccagcaggaacacaagttcttgtgaatgcatgggcaattggaaga |
178 |
Q |
| |
|
|||||||||||||||||||||||| | || ||||||||||||||| ||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
41654553 |
agagtgtattgaaacttgtgagataaatggatacacaataccagctggaacacaagtgtttgtgaatgcatgggcaattggaaga |
41654637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 94 - 178
Target Start/End: Original strand, 41647018 - 41647102
Alignment:
| Q |
94 |
agagtgtattgaaacttgtgagattagtgaatacacaataccagcaggaacacaagttcttgtgaatgcatgggcaattggaaga |
178 |
Q |
| |
|
|||||||||||||||||||||||| | || ||||||||||||||| ||||||||||| |||||||| ||||||||||||||||| |
|
|
| T |
41647018 |
agagtgtattgaaacttgtgagataaatggatacacaataccagctggaacacaagtgtttgtgaattcatgggcaattggaaga |
41647102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 28 - 84
Target Start/End: Original strand, 41646938 - 41646994
Alignment:
| Q |
28 |
gatcttcaagaattgaaatttctaaaagaagtgattaaagaaaccttaagaatgcac |
84 |
Q |
| |
|
||||||||| || ||||||||||||||| ||| |||||||||||||||||| ||||| |
|
|
| T |
41646938 |
gatcttcaaaaactgaaatttctaaaagcagttattaaagaaaccttaagattgcac |
41646994 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 28 - 83
Target Start/End: Complemental strand, 41621050 - 41620995
Alignment:
| Q |
28 |
gatcttcaagaattgaaatttctaaaagaagtgattaaagaaaccttaagaatgca |
83 |
Q |
| |
|
|||||| ||||| ||||||||||||||| ||| |||||||||||||| ||| |||| |
|
|
| T |
41621050 |
gatcttgaagaactgaaatttctaaaagcagttattaaagaaaccttcagactgca |
41620995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 28 - 83
Target Start/End: Original strand, 41654473 - 41654528
Alignment:
| Q |
28 |
gatcttcaagaattgaaatttctaaaagaagtgattaaagaaaccttaagaatgca |
83 |
Q |
| |
|
|||||||||||| |||||| |||||||| ||| ||||||||||| |||||| |||| |
|
|
| T |
41654473 |
gatcttcaagaactgaaatatctaaaagcagttattaaagaaacattaagagtgca |
41654528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 94 - 178
Target Start/End: Complemental strand, 41620970 - 41620886
Alignment:
| Q |
94 |
agagtgtattgaaacttgtgagattagtgaatacacaataccagcaggaacacaagttcttgtgaatgcatgggcaattggaaga |
178 |
Q |
| |
|
||||||| ||||||||||||||| | || |||||||||||| | |||||||| || | |||||| |||||||||||| |||| |
|
|
| T |
41620970 |
agagtgtgctgaaacttgtgagataaatggatacacaataccgggcggaacacacgtgttagtgaatacatgggcaattgcaaga |
41620886 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 94 - 178
Target Start/End: Original strand, 2433488 - 2433572
Alignment:
| Q |
94 |
agagtgtattgaaacttgtgagattagtgaatacacaataccagcaggaacacaagttcttgtgaatgcatgggcaattggaaga |
178 |
Q |
| |
|
|||||||||||||||||||||||||| || ||||||||||||| | ||||||||||| ||||||||| ||||||||| |||||| |
|
|
| T |
2433488 |
agagtgtattgaaacttgtgagattaatggatacacaataccatctggaacacaagtgtttgtgaatggatgggcaataggaaga |
2433572 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 49; Significance: 6e-19; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 94 - 178
Target Start/End: Complemental strand, 12438498 - 12438414
Alignment:
| Q |
94 |
agagtgtattgaaacttgtgagattagtgaatacacaataccagcaggaacacaagttcttgtgaatgcatgggcaattggaaga |
178 |
Q |
| |
|
|||||||||||||| ||||| | ||| | ||||| ||||||||| ||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
12438498 |
agagtgtattgaaaattgtgtggttaacggatacataataccagccggaacacaagtgcttgtgaatgcatgggcaattggaaga |
12438414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 29 - 84
Target Start/End: Complemental strand, 12438580 - 12438525
Alignment:
| Q |
29 |
atcttcaagaattgaaatttctaaaagaagtgattaaagaaaccttaagaatgcac |
84 |
Q |
| |
|
||||||||||| | |||| | |||||| |||||||||||||||||||||| ||||| |
|
|
| T |
12438580 |
atcttcaagaactaaaatatttaaaagcagtgattaaagaaaccttaagattgcac |
12438525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University