View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12977_low_27 (Length: 382)
Name: NF12977_low_27
Description: NF12977
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12977_low_27 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 356; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 1 - 376
Target Start/End: Original strand, 38968606 - 38968981
Alignment:
| Q |
1 |
agttgagaaatgggaaaaagaaaaatttcactatcccattttttacctagcttttattatactataagagaagttaatgtcacaatatgccatactttgc |
100 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38968606 |
agttgagaaatgggaaaaagaaaaaattcactatcccattttttacctagcttttattatactataagagaagttaatgtcacaatatgccatactttgc |
38968705 |
T |
|
| Q |
101 |
tttgatgcaccttgttacccaaaatttatgcagatcttaaccttaataatcatgattcaataatatgtcccatatttttcactttgaaaatcttctaaat |
200 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
38968706 |
tttgatgcaccttgttaccaaaaatttatgcagatcttaaccttaataatcatgattcaagaatatatcccatatttttcactttgaaaatcttctaaat |
38968805 |
T |
|
| Q |
201 |
cactcgctaataaaatttgtagttggaaaactcgacaaagataattgttgtcctttgcttttgatagtccaatttggatatgggattcacctgaattatg |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38968806 |
cactcgctaataaaatttgtagttggaaaactcgacaaagataattgttgtcctttgcttttgatagtccaatttggatatgggattcacctgaattatg |
38968905 |
T |
|
| Q |
301 |
agcaatctgaaattacattacagacttgcccatttagtgtacatatcgtaaaccataccaatcaatttcatctcac |
376 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
38968906 |
agcaatctgaaattacattacagacttgcccatttagtgtacatatcgtaaaccataccaatcaatttcatgtcac |
38968981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University