View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12977_low_28 (Length: 367)
Name: NF12977_low_28
Description: NF12977
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12977_low_28 |
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Alignment Details
Target: chr8 (Bit Score: 325; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 17 - 349
Target Start/End: Original strand, 36383467 - 36383799
Alignment:
| Q |
17 |
catcatctctgccaagattttcatccggcaaaaatggtccaaaagcatcccagtacaagaagcaacgttcactgtcaaacatagataggagagaggtcga |
116 |
Q |
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| T |
36383467 |
catcatctctgccaagattttcatccggcaaaaatggtccaaaagcatcccagtacaagaagcaacgttcactgtcaaatatagataggagagaggtcga |
36383566 |
T |
|
| Q |
117 |
cccagcaagtggtgatccttggagaccaacaggtcgtgatagaacatcactacatgaaggttcttctgttcttgatcttaaaggtgacaattacttctcc |
216 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36383567 |
ccctgcaagtggtgatccttggagaccaacaggtcgtgatagaacatcactacatgaaggttcttctgttcttgatcttaaaggtgacaattacttctcc |
36383666 |
T |
|
| Q |
217 |
tgttctgttgcacgaaagagatcaagtgcccgctaccttcttaaaacctcacaagatattgtcaatctcttaagtgacctggcggatcgttcttcatctc |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36383667 |
tgttctgttgcacgaaagagatcaagtgcccgctaccttcttaaaacctcacaagatattgtcaatctcttaagtgacctggcggatcgttcttcatctc |
36383766 |
T |
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| Q |
317 |
catcaacttgaccgatacaccctccttcaatat |
349 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
36383767 |
catcaacttgaccgatacaccctccttcaatat |
36383799 |
T |
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