View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12977_low_29 (Length: 365)
Name: NF12977_low_29
Description: NF12977
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12977_low_29 |
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Alignment Details
Target: chr4 (Bit Score: 111; Significance: 6e-56; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 18 - 148
Target Start/End: Original strand, 24836469 - 24836599
Alignment:
| Q |
18 |
attacttgcttaattgttgtttcctacctctcttttttctttccagttgtttggagtttcttgtaatgtaactttgtacttttgataagtcagtctggta |
117 |
Q |
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| T |
24836469 |
attacttgcttaattgttgtttcctacctcttttttttctttctagttgtttggagtttcttgtaatgtaactttgtacttttgataagtcaatctcgta |
24836568 |
T |
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| Q |
118 |
catcttatgtcagagggacttaatgtgtgtg |
148 |
Q |
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|||||| |||||||||||||||||||||||| |
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| T |
24836569 |
catcttgtgtcagagggacttaatgtgtgtg |
24836599 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 18 - 148
Target Start/End: Original strand, 24841361 - 24841491
Alignment:
| Q |
18 |
attacttgcttaattgttgtttcctacctctcttttttctttccagttgtttggagtttcttgtaatgtaactttgtacttttgataagtcagtctggta |
117 |
Q |
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| T |
24841361 |
attacttgcttaattgttgtttcctacctcttttttttctttccagttgtttgtagtttcttgtaatgtaaatttgtacttttgataagtcaatctagta |
24841460 |
T |
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| Q |
118 |
catcttatgtcagagggacttaatgtgtgtg |
148 |
Q |
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| T |
24841461 |
catcttgtgtcagagggagttaatgtgtgtg |
24841491 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 181 - 354
Target Start/End: Original strand, 24841526 - 24841700
Alignment:
| Q |
181 |
ctaatgaccacatacaactaagataaataaggaaataaaacagtaagaatattgagtatcatctcattaagggtatatta-ttcnnnnnnnntctcatta |
279 |
Q |
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| T |
24841526 |
ctaatgaccaaagacaactaagataaataaggaaataaaacagtaagaatatagagtatcatctcattaagagtatattactccaaaaaaaatctcatta |
24841625 |
T |
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| Q |
280 |
agggtattattcctataataaaaaattaacatcattctcaactatcaattctcttttatgatttctcttgccttt |
354 |
Q |
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| T |
24841626 |
agagtattattcctgtaataaaaaattgccaccattctcaactatcaattctcttttatgatttctcttgccttt |
24841700 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 181 - 354
Target Start/End: Original strand, 24836656 - 24836830
Alignment:
| Q |
181 |
ctaatgaccacatacaactaagataaataaggaaataaaacagtaagaatattgagtatcatctcattaagggtatattattcnnnnnnnn-tctcatta |
279 |
Q |
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| T |
24836656 |
ctaatgaccaaagacaactaagataaataaagaaataaaacaataagaatatagagtatcatctcattaaaggtatattactcaaaaaaaaatctcatta |
24836755 |
T |
|
| Q |
280 |
agggtattattcctataataaaaaattaacatcattctcaactatcaattctcttttatgatttctcttgccttt |
354 |
Q |
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| T |
24836756 |
agggtattattcctataataaaaaattgccaccattctcaactgtcaattctcttttatgatttctcttgccttt |
24836830 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 18 - 127
Target Start/End: Original strand, 24755641 - 24755751
Alignment:
| Q |
18 |
attacttgcttaattgttgtttcctacctctcttt-tttctttccagttgtttggagtttcttgtaatgtaactttgtacttttgataagtcagtctggt |
116 |
Q |
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||||||||| ||||| |||||||||| || | | | ||||| ||||||||||| ||||||||||||||||||||||||||||| |||||||| | |||| |
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| T |
24755641 |
attacttgcctaattcttgtttcctagctttttctctttctgtccagttgtttcgagtttcttgtaatgtaactttgtactttagataagtcgttatggt |
24755740 |
T |
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| Q |
117 |
acatcttatgt |
127 |
Q |
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||||||||||| |
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| T |
24755741 |
acatcttatgt |
24755751 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 181 - 256
Target Start/End: Original strand, 24769043 - 24769119
Alignment:
| Q |
181 |
ctaatgaccacatacaactaagataaataaggaaataaaacagtaaga-atattgagtatcatctcattaagggtat |
256 |
Q |
| |
|
|||||||||| | | ||||||||||| ||||||||||||||||||| | |||| || ||||||||||||| |||||| |
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| T |
24769043 |
ctaatgaccaaagataactaagataattaaggaaataaaacagtaaaatatatagattatcatctcattatgggtat |
24769119 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 272 - 348
Target Start/End: Original strand, 24769105 - 24769181
Alignment:
| Q |
272 |
tctcattaagggtattattcctataataaaaaattaacatcattctcaactatcaattctcttttatgatttctctt |
348 |
Q |
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|||||||| ||||||||||||||||| || || || || |||||| |||||| |||||||||||||||||| |||| |
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| T |
24769105 |
tctcattatgggtattattcctataaaaataatttgtcaccattcttaactattaattctcttttatgatttttctt |
24769181 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 299 - 354
Target Start/End: Original strand, 24755899 - 24755954
Alignment:
| Q |
299 |
aaaaaattaacatcattctcaactatcaattctcttttatgatttctcttgccttt |
354 |
Q |
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| T |
24755899 |
aaaaaattaccaccattctcaaatattaattctcttttataatttttcttgccttt |
24755954 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 204 - 249
Target Start/End: Original strand, 24755831 - 24755875
Alignment:
| Q |
204 |
taaataaggaaataaaacagtaagaatattgagtatcatctcatta |
249 |
Q |
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| T |
24755831 |
taaataaggaaataaaacagtaa-aatatagagtatcatctgatta |
24755875 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 64 - 108
Target Start/End: Complemental strand, 41200308 - 41200264
Alignment:
| Q |
64 |
ttgtttggagtttcttgtaatgtaactttgtacttttgataagtc |
108 |
Q |
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| T |
41200308 |
ttgtttggagatttttgcaatgtaactttgtacttttaataagtc |
41200264 |
T |
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