View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12977_low_3 (Length: 933)
Name: NF12977_low_3
Description: NF12977
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12977_low_3 |
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| [»] scaffold0061 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 770; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 770; E-Value: 0
Query Start/End: Original strand, 7 - 910
Target Start/End: Complemental strand, 13473428 - 13472525
Alignment:
| Q |
7 |
tacttaaaaattgtttaaaactcaaacgacatatgttatttcttagtgttagttgttgacgactctcttcatttttatgattgaaataatgatttaattg |
106 |
Q |
| |
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|||||||||||||||||||| ||||||||| |||||||||| |||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
13473428 |
tacttaaaaattgtttaaaattcaaacgacgtatgttattttttagtgatagttgttgacaactctcttcatttttatgattgaaataatgatttaattg |
13473329 |
T |
|
| Q |
107 |
aaatcggtttgattaaaacgacagaaaataaatatatatcttatatccgaaatcaatacattcaccatgttagttgtaaatatgagaagggtcatgtgtt |
206 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
13473328 |
aaatcggtttgattaaaacgacagaaaataaatatatatcttatatccgaaatcaatacattcaccatgttagttgtaaatatgagaagggtcgtgtgtt |
13473229 |
T |
|
| Q |
207 |
tttgtttttaaataatatcgttgatactcgttaattttaagtattggtccacggtggaccaattatgaaagtgatccatctaagaactcacattataaat |
306 |
Q |
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||||||| ||||||||||||||||||||| |||||||||||||||||||||| | || || ||||||| ||| | |||||||||||||||||||||||| |
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| T |
13473228 |
tttgtttataaataatatcgttgatactcattaattttaagtattggtccacaatagatcacttatgaaggtggttcatctaagaactcacattataaat |
13473129 |
T |
|
| Q |
307 |
caatagagaagtaagttgactcaaatttaaaattagcattaaaagtaaaaagacaagaaaacataaatatagttatgaattgcctatatatggaggaaac |
406 |
Q |
| |
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||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13473128 |
caacagagaagtaagttgactcaaatttaaaattggcattaaaagtaaaaagacaagaaaacataaatatagttatgaattgcctatatatggaggaaac |
13473029 |
T |
|
| Q |
407 |
taagtgaagtagctgtccactaagtgacagggcgcatttgtgccactttgctaaagttatgaatttcaatatcaaagcactaatgaacgacatgtatatg |
506 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
13473028 |
taagtgaagtagctgtccactaagtgacagggcgaatttgtgccactttgctaaagttatgaatttcaatatcaaagcactaatgaatgacatgtatatg |
13472929 |
T |
|
| Q |
507 |
ctatttccatcgacatgtcaacttcgtttattctttcttgtcgaatttagggcttcatttgtttaatgttgattgattttccttaacttgcatgagtatt |
606 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| || |
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| T |
13472928 |
ctatttccatcgacatgtcaacttcgtttattctttcttgtcgaatttagggcttcatttgtttaatattgattgattttccttaacttgcatgagtgtt |
13472829 |
T |
|
| Q |
607 |
ggcnnnnnnngaagaagcagcatgagtattgactgaatgatgcatcgtctgtttcatttcttatgaatattgaatttagactatcctcgcatagcagtta |
706 |
Q |
| |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13472828 |
ggctttttttgaagaagcagcatgagtattgactgaatgatgcatcgtctgtttcatttcttatgaatattgaatttagactatcctcgcatagcagtta |
13472729 |
T |
|
| Q |
707 |
gggactgtgttataggttttaccgttcaagtatgcactattttaaatcaaggcttaatnnnnnnngtttgttgtaagaaacgatttgtaaaataagttgc |
806 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
13472728 |
gggactgtgttataggttttaccgttcaagtatgcactattttaaatcaaggcttaataaaaaaagtttgttgtaagaaacgatttgtaaaataagttgc |
13472629 |
T |
|
| Q |
807 |
aaagaatagaaagattgtgctgagattagacgtcggctatttattcaacgcatcctcttagattgattgtatattttctaagatttaaatatgtctccac |
906 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13472628 |
aatgaatagaaagattgtgctgagattagacgtcggctatttattcaacgcatcctcttagattgattgtatattttctaagatttaaatatgtctccac |
13472529 |
T |
|
| Q |
907 |
ctat |
910 |
Q |
| |
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|||| |
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| T |
13472528 |
ctat |
13472525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 75 - 124
Target Start/End: Original strand, 24300871 - 24300920
Alignment:
| Q |
75 |
tcatttttatgattgaaataatgatttaattgaaatcggtttgattaaaa |
124 |
Q |
| |
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|||||||||||||||||||| ||| |||||| || |||||||||||||| |
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| T |
24300871 |
tcatttttatgattgaaatattgacttaattaaatccggtttgattaaaa |
24300920 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 75 - 124
Target Start/End: Complemental strand, 24372444 - 24372395
Alignment:
| Q |
75 |
tcatttttatgattgaaataatgatttaattgaaatcggtttgattaaaa |
124 |
Q |
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|||||||||||||||||||| ||| |||||| || |||||||||||||| |
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| T |
24372444 |
tcatttttatgattgaaatattgacttaattaaatccggtttgattaaaa |
24372395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 49; Significance: 2e-18; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 45 - 230
Target Start/End: Original strand, 16952479 - 16952667
Alignment:
| Q |
45 |
tttcttagtgttagttgttgacgactctcttcatttttatgattgaaataatgatttaattgaaatcggtttgattaaaacgacagaaaataaatatata |
144 |
Q |
| |
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|||||||||| ||| |||| | || ||| ||||||||| |||||||||| ||| |||||||||| ||||||||||||||| || |||||||||||| || |
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| T |
16952479 |
tttcttagtgatagatgttaatgatcctcctcatttttaagattgaaatagtgacttaattgaaaccggtttgattaaaacaacggaaaataaatatgta |
16952578 |
T |
|
| Q |
145 |
tcttatat----ccgaaatcaatacattcaccatgttagttgtaaatatgagaagggtcatgtgtttttgtttttaaataatatcgttga |
230 |
Q |
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|| ||| |||| |||||| | ||||||| |||| |||||||||| |||| ||||||| |||| ||||| |||| ||||||||| |
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| T |
16952579 |
gctcctattgaaccgatatcaatcaagtcaccatcttagccgtaaatatgaaaaggatcatgtg-ttttatttttcaatagtatcgttga |
16952667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.00000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 77 - 129
Target Start/End: Complemental strand, 44382676 - 44382624
Alignment:
| Q |
77 |
atttttatgattgaaataatgatttaattgaaatcggtttgattaaaacgaca |
129 |
Q |
| |
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||||||||||||||||||||||||||||||| ||| ||||||| | ||||||| |
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| T |
44382676 |
atttttatgattgaaataatgatttaattgatatcagtttgatcataacgaca |
44382624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 75 - 125
Target Start/End: Complemental strand, 3584380 - 3584330
Alignment:
| Q |
75 |
tcatttttatgattgaaataatgatttaattgaaatcggtttgattaaaac |
125 |
Q |
| |
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||||||||| ||||||||||||||||||||||| | | ||||||||||||| |
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| T |
3584380 |
tcatttttaagattgaaataatgatttaattgataccagtttgattaaaac |
3584330 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0061 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0061
Description:
Target: scaffold0061; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 75 - 144
Target Start/End: Complemental strand, 11638 - 11569
Alignment:
| Q |
75 |
tcatttttatgattgaaataatgatttaattgaaatcggtttgattaaaacgacagaaaataaatatata |
144 |
Q |
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| T |
11638 |
tcatttttatgattgaaataataatttatttgatatagattggattaaaacaatggaaaataaatatata |
11569 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 77 - 140
Target Start/End: Complemental strand, 51046872 - 51046809
Alignment:
| Q |
77 |
atttttatgattgaaataatgatttaattgaaatcggtttgattaaaacgacagaaaataaata |
140 |
Q |
| |
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||||||| |||||||||||||||||||||| ||| |||||||||||| ||| ||| |||||| |
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| T |
51046872 |
atttttacgattgaaataatgatttaattgttatcaatttgattaaaacaacaaaaactaaata |
51046809 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 71 - 141
Target Start/End: Complemental strand, 7779941 - 7779871
Alignment:
| Q |
71 |
ctcttcatttttatgattgaaataatgatttaattgaaatcggtttgattaaaacgacagaaaataaatat |
141 |
Q |
| |
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||||| ||||||| |||||||||||||| |||| ||| ||| |||||||||||| | |||||||||||| |
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| T |
7779941 |
ctctttatttttacgattgaaataatgacttaactgatatcaatttgattaaaactatggaaaataaatat |
7779871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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