View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12977_low_31 (Length: 340)
Name: NF12977_low_31
Description: NF12977
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12977_low_31 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 29 - 340
Target Start/End: Original strand, 48569519 - 48569829
Alignment:
| Q |
29 |
gacagaggatgaattgatggagtattttcccgagcaggcagacttttttaacaaaattatcattagctgatgacggctgtttagttaaatgtatttcaaa |
128 |
Q |
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| T |
48569519 |
gacaaaggatgaattgatggagtattttcccgagcaggcagacttttttaacaaaattatcattggctgatgacggctgtttggttaaatgtatttcaaa |
48569618 |
T |
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| Q |
129 |
tgagtttatttaattacatcaagaacatgaatgcaggtttatgagctcaacaatatgnnnnnnnattaaacgcaaattctggaggcttgtatatgattta |
228 |
Q |
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| T |
48569619 |
tgagtttatttaattacatcaagaacatgaatgcaggtttatgagctcaacaaaatg-ttttttattaaacgcaaattctggaggcttgtatatgattta |
48569717 |
T |
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| Q |
229 |
gtggatgttggaaggctatcttctgcacgtcatcagnnnnnnnctctcccatagttatcttgtaataagttgccatgtgcagtgcggctattatactgat |
328 |
Q |
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| T |
48569718 |
gtggatgttggaaggctatcttctgcacgtcatcagtttttttctctcccatagttatctcgtaataagttgccatgtgcagtgcggctattatactgtt |
48569817 |
T |
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| Q |
329 |
gtaaaatatata |
340 |
Q |
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| T |
48569818 |
gtaaaatatata |
48569829 |
T |
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Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 34 - 102
Target Start/End: Original strand, 36145898 - 36145966
Alignment:
| Q |
34 |
aggatgaattgatggagtattttcccgagcaggcagacttttttaacaaaattatcattagctgatgac |
102 |
Q |
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| T |
36145898 |
aggatgaattgatggagtattttcctgagcaagctgagtttttaaacaaaatgatcattagctgatgac |
36145966 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 34 - 102
Target Start/End: Complemental strand, 10821490 - 10821422
Alignment:
| Q |
34 |
aggatgaattgatggagtattttcccgagcaggcagacttttttaacaaaattatcattagctgatgac |
102 |
Q |
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| T |
10821490 |
aggatgaattgattgagtattttccagagcaagctgagtttttaaacaaaatgatcattagctgatgac |
10821422 |
T |
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