View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12977_low_32 (Length: 335)
Name: NF12977_low_32
Description: NF12977
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12977_low_32 |
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Alignment Details
Target: chr7 (Bit Score: 300; Significance: 1e-169; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 1 - 333
Target Start/End: Original strand, 48569821 - 48570157
Alignment:
| Q |
1 |
aaatatatagttttggttttctagaggatcctccatatgaggtaatcctattcaagttgtgtcggatcgcaacatgtagatacctctcttaactataact |
100 |
Q |
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| T |
48569821 |
aaatatatagttttggttttctagaggatcctccatatgaggtaatcctattcaagttgtgtcggatcgcaacatgtagatacctctcttaactataact |
48569920 |
T |
|
| Q |
101 |
agtattcaaacttgagtttgtcatgttgcgagagtctaaccctatcgctagctcaatcttagttggcgaaatattttacttgaaataagcattgtaacct |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
48569921 |
agtattcaaacttgagtttgtcatgttgcgagagtctaaccctatcgctagctcaatcttagttggcgaaatattttacttgaaataagcatcgtaacct |
48570020 |
T |
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| Q |
201 |
ttttgaattttagtgaagggagacttccgttaaaatatttgggattgccggtgggggcaaatccgggtagagaggccacgtggaagacgttggaaca--- |
297 |
Q |
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| T |
48570021 |
ttttgaattttagtgaagggagacttccatttaaatatttgggattgctggtgggggcaaatccgggtagagaggccacatggaagacgttggaacaaat |
48570120 |
T |
|
| Q |
298 |
-aatgtcggagaaattgaactcgtggtcatggggaaa |
333 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
48570121 |
taatgtcggagaaattgaactcgtggtcatggggaaa |
48570157 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 199 - 265
Target Start/End: Original strand, 13853082 - 13853148
Alignment:
| Q |
199 |
ctttttgaattttagtgaagggagacttccgttaaaatatttgggattgccggtgggggcaaatccg |
265 |
Q |
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||||||||||| |||| ||||||| ||||| || || ||||||||||| ||||||||||| |||||| |
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| T |
13853082 |
ctttttgaattgtagtcaagggaggcttccatttaagtatttgggattaccggtgggggctaatccg |
13853148 |
T |
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