View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12977_low_35 (Length: 303)
Name: NF12977_low_35
Description: NF12977
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12977_low_35 |
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Alignment Details
Target: chr4 (Bit Score: 261; Significance: 1e-145; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 12 - 284
Target Start/End: Complemental strand, 1681426 - 1681154
Alignment:
| Q |
12 |
aatactatgatggggggaatgcacagacagactaccctgttactgatcttctgcagatgatgggtcatgccagtcgtcctttggtggaccattctggaaa |
111 |
Q |
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| T |
1681426 |
aatactatgatggggagaatgcacagacagactaccctgttactgatcttctgcagatgatgggtcatgccagtcgtcctttggtggaccattctggaaa |
1681327 |
T |
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| Q |
112 |
gtgtgtcatcttatgccatgcaccttctaaggagtattacaaaaagtttttgttcgaagcattcccggttgaaagtcatcttcatcactttttacatgat |
211 |
Q |
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| T |
1681326 |
gtgtgtcatcttatgccatgcaccttctaaggagtattacaaaaagtttttgttcgaagcattcccggttgaaagtcatcttcatcactttttacatgat |
1681227 |
T |
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| Q |
212 |
aatttgaatgctgaaattgttgctggaattattgaaaacaagcaagacgctgtagattatcttacatggacat |
284 |
Q |
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| T |
1681226 |
aatatgaatgctgaaattgttgctggaattattgaaaacaagcaagacgatgtagattatcttacatggacat |
1681154 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 14 - 284
Target Start/End: Original strand, 2799304 - 2799574
Alignment:
| Q |
14 |
tactatgatggggggaatgcacagacagactaccctgttactgatcttctgcagatgatgggtcatgccagtcgtcctttggtggaccattctggaaagt |
113 |
Q |
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| T |
2799304 |
tactatgatggggagaatgcacagacagactaccctgttactgatcttctgcagatgatgggtcatgccagtcgtcctttggtggaccattctggaaagt |
2799403 |
T |
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| Q |
114 |
gtgtcatcttatgccatgcaccttctaaggagtattacaaaaagtttttgttcgaagcattcccggttgaaagtcatcttcatcactttttacatgataa |
213 |
Q |
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| T |
2799404 |
gtgtcatcttatgccatgcaccttctaaggagtattacaaaaagtttttgttcgaagcattcccggttgaaagtcatcttcatcactttttacatgataa |
2799503 |
T |
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| Q |
214 |
tttgaatgctgaaattgttgctggaattattgaaaacaagcaagacgctgtagattatcttacatggacat |
284 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| |
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| T |
2799504 |
tttgaatgctgaaattgttgctggaattattgaaaacaagcaagacgttgttgattatcttacatggacat |
2799574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 137; Significance: 1e-71; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 28 - 284
Target Start/End: Original strand, 29268494 - 29268750
Alignment:
| Q |
28 |
gaatgcacagacagactaccctgttactgatcttctgcagatgatgggtcatgccagtcgtcctttggtggaccattctggaaagtgtgtcatcttatgc |
127 |
Q |
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| T |
29268494 |
gaatgcccagacagattaccctgttactgatttgctgcaaatgatgggtcatgccagccgtcctttagtagacaattctggaaaatgtgtcatcttatgc |
29268593 |
T |
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| Q |
128 |
catgcaccttctaaggagtattacaaaaagtttttgttcgaagcattcccggttgaaagtcatcttcatcactttttacatgataatttgaatgctgaaa |
227 |
Q |
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|| |||||| || ||||| ||||| |||||| ||| ||||||||||| |||||||| |||||||||||||| || || || || ||||||||||||| |
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| T |
29268594 |
cacgcacctcgcaaagagtactacaagaagtttctgtatgaagcattcccagttgaaagccatcttcatcacttcttgcacgacaacttgaatgctgaaa |
29268693 |
T |
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| Q |
228 |
ttgttgctggaattattgaaaacaagcaagacgctgtagattatcttacatggacat |
284 |
Q |
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|||||||||| |||||||||||||||||||| ||||| ||||||||||||||||||| |
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| T |
29268694 |
ttgttgctgggattattgaaaacaagcaagatgctgttgattatcttacatggacat |
29268750 |
T |
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