View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12977_low_36 (Length: 294)

Name: NF12977_low_36
Description: NF12977
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12977_low_36
NF12977_low_36
[»] chr3 (2 HSPs)
chr3 (11-276)||(16005338-16005603)
chr3 (114-146)||(6136389-6136421)
[»] chr2 (1 HSPs)
chr2 (97-146)||(19245866-19245915)
[»] chr7 (2 HSPs)
chr7 (115-145)||(8629627-8629657)
chr7 (106-146)||(4575007-4575047)
[»] scaffold0186 (1 HSPs)
scaffold0186 (106-146)||(8718-8758)
[»] chr8 (1 HSPs)
chr8 (114-146)||(26879787-26879819)
[»] chr6 (1 HSPs)
chr6 (114-146)||(31108354-31108386)
[»] chr4 (1 HSPs)
chr4 (114-146)||(10394887-10394919)
[»] chr1 (1 HSPs)
chr1 (106-146)||(25146580-25146620)


Alignment Details
Target: chr3 (Bit Score: 250; Significance: 1e-139; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 11 - 276
Target Start/End: Complemental strand, 16005603 - 16005338
Alignment:
Q  11 atgagatgaatcaatgtaaccattcacatacactttagaagagatggcacacccttgtgcaacacggggaagaacttcatcgcctaaagttcaaggggaa 110  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  16005603 atgatatgaatcaatgtaaccattcacatacactttagaagagatggcacacccttgtgcaacacggggaagaacttcatcgcctaaaattcaaggggaa 16005504  T
Q  111 taacaaaatcataaatcgtaaaatcgcaatcaaaatgatgaattttgagatttaagttgggatagttaaaacctaatatgcaaaaatcaaagtacctctt 210  Q
    |||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16005503 taacaaaatcataaatcgtaaaatcgcaatcaaaatcatgaattttgggatttaagttgggatagttaaaacctaatatgcaaaaatcaaagtacctctt 16005404  T
Q  211 ccaaaagcttttgcataaccgatttcatatccttcttcataagcagcatcgtttctttgagaagtg 276  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16005403 ccaaaagcttttgcataaccgatttcatatccttcttcataagcagcatcgtttctttgagaagtg 16005338  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 114 - 146
Target Start/End: Original strand, 6136389 - 6136421
Alignment:
Q  114 caaaatcataaatcgtaaaatcgcaatcaaaat 146  Q
    |||||||| ||||||||||||||||||||||||    
T  6136389 caaaatcaaaaatcgtaaaatcgcaatcaaaat 6136421  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 97 - 146
Target Start/End: Complemental strand, 19245915 - 19245866
Alignment:
Q  97 aagttcaaggggaataacaaaatcataaatcgtaaaatcgcaatcaaaat 146  Q
    ||||| || ||||||| |||||||| ||||||||||||||||||||||||    
T  19245915 aagttgaaagggaatagcaaaatcaaaaatcgtaaaatcgcaatcaaaat 19245866  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 115 - 145
Target Start/End: Original strand, 8629627 - 8629657
Alignment:
Q  115 aaaatcataaatcgtaaaatcgcaatcaaaa 145  Q
    |||||||||||||||||||||||||||||||    
T  8629627 aaaatcataaatcgtaaaatcgcaatcaaaa 8629657  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 106 - 146
Target Start/End: Complemental strand, 4575047 - 4575007
Alignment:
Q  106 gggaataacaaaatcataaatcgtaaaatcgcaatcaaaat 146  Q
    |||||||  ||||||| ||||||||||||||||||||||||    
T  4575047 gggaatagtaaaatcaaaaatcgtaaaatcgcaatcaaaat 4575007  T

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Target: scaffold0186 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0186
Description:

Target: scaffold0186; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 106 - 146
Target Start/End: Complemental strand, 8758 - 8718
Alignment:
Q  106 gggaataacaaaatcataaatcgtaaaatcgcaatcaaaat 146  Q
    |||||||||||||||  || |||||||||||||||||||||    
T  8758 gggaataacaaaatcggaactcgtaaaatcgcaatcaaaat 8718  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 114 - 146
Target Start/End: Complemental strand, 26879819 - 26879787
Alignment:
Q  114 caaaatcataaatcgtaaaatcgcaatcaaaat 146  Q
    |||||||| ||||||||||||||||||||||||    
T  26879819 caaaatcaaaaatcgtaaaatcgcaatcaaaat 26879787  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 114 - 146
Target Start/End: Complemental strand, 31108386 - 31108354
Alignment:
Q  114 caaaatcataaatcgtaaaatcgcaatcaaaat 146  Q
    ||||||| |||||||||||||||||||||||||    
T  31108386 caaaatcgtaaatcgtaaaatcgcaatcaaaat 31108354  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 114 - 146
Target Start/End: Complemental strand, 10394919 - 10394887
Alignment:
Q  114 caaaatcataaatcgtaaaatcgcaatcaaaat 146  Q
    |||||||| ||||||||||||||||||||||||    
T  10394919 caaaatcaaaaatcgtaaaatcgcaatcaaaat 10394887  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 106 - 146
Target Start/End: Original strand, 25146580 - 25146620
Alignment:
Q  106 gggaataacaaaatcataaatcgtaaaatcgcaatcaaaat 146  Q
    ||||||| |||||||  ||||||||||||||||||||||||    
T  25146580 gggaatagcaaaatcggaaatcgtaaaatcgcaatcaaaat 25146620  T

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