View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12977_low_39 (Length: 274)
Name: NF12977_low_39
Description: NF12977
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12977_low_39 |
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Alignment Details
Target: chr6 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 258
Target Start/End: Complemental strand, 7224355 - 7224097
Alignment:
| Q |
1 |
aattcccaagttaaggaatattttgtttaatacagggacaatggttctgagaaggaatatcttgtgaagtggagagagcttccttatgatgaatgccatt |
100 |
Q |
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| T |
7224355 |
aattcccaagttaaggaatattttgtttaatacagggacaatggtgctgagaaggaatatcttgtgaagtggaaagagcttccttatgatgaatgccatt |
7224256 |
T |
|
| Q |
101 |
gggagcttgagtcagatatctcttcgttttaggcagaaatagagagattcaatatatttcgttctaggtctaggaagatttcttatagtaagcaa-aaaa |
199 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| |
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| T |
7224255 |
gggagcttgagtcagatatctcttcgttttaggcagaaatagagagattcaatatatttggttctaggtctaggaagatttcttatagtaagcaaaaaaa |
7224156 |
T |
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| Q |
200 |
cagtgttagtgatgatgttgaattgataaagcagcagaatgaatttcaacagtatgaac |
258 |
Q |
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| T |
7224155 |
cagtgttagtgatgatgctgaattgataaagcagcagaatgaatttcaacagtatgaac |
7224097 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 258
Target Start/End: Complemental strand, 2918839 - 2918581
Alignment:
| Q |
1 |
aattcccaagttaaggaatattttgtttaatacagggacaatggttctgagaaggaatatcttgtgaagtggagagagcttccttatgatgaatgccatt |
100 |
Q |
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||||||||||||| ||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
2918839 |
aattcccaagttatggaatattttgtttaatacagggaccatggtgctgagaaggaatatcttgtgaagtggaaagagcttccttatgatgaatgccatt |
2918740 |
T |
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| Q |
101 |
gggagcttgagtcagatatctcttcgttttaggcagaaatagagagattcaatatatttcgttctaggtctaggaagatttcttatagtaagcaaaaa-a |
199 |
Q |
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|||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
2918739 |
gggagcttgagtcagatatctctttgtttcaggcagaaatagagagattcaatatatttcgttctaggtctaggaagatttcttattgtaagcaaaaagg |
2918640 |
T |
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| Q |
200 |
cagtgttagtgatgatgttgaattgataaagcagcagaatgaatttcaacagtatgaac |
258 |
Q |
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| T |
2918639 |
cagtgttagtgatgatgctgaattgataaagcagcagaaagaatttcaacagtatgaac |
2918581 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 48 - 167
Target Start/End: Original strand, 49037919 - 49038038
Alignment:
| Q |
48 |
tgagaaggaatatcttgtgaagtggagagagcttccttatgatgaatgccattgggagcttgagtcagatatctcttcgttttaggcagaaatagagaga |
147 |
Q |
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||||| ||||||||| |||||||||| ||||||||| ||||||||||| ||||||| |||||| ||||| ||| | ||| || | |||||||| ||| |
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| T |
49037919 |
tgagagggaatatctggtgaagtggaaagagcttccatatgatgaatgttattgggaatctgagtctgatatttctgcatttcagccggaaatagaaaga |
49038018 |
T |
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| Q |
148 |
ttcaatatatttcgttctag |
167 |
Q |
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|| |||| |||||||||||| |
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| T |
49038019 |
tttaatagatttcgttctag |
49038038 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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