View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12977_low_4 (Length: 916)

Name: NF12977_low_4
Description: NF12977
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12977_low_4
NF12977_low_4
[»] chr3 (3 HSPs)
chr3 (341-899)||(48235832-48236390)
chr3 (15-332)||(48236418-48236735)
chr3 (385-443)||(25252041-25252099)
[»] chr1 (5 HSPs)
chr1 (614-886)||(3686383-3686655)
chr1 (140-196)||(3685864-3685920)
chr1 (384-445)||(6025970-6026031)
chr1 (412-445)||(33651683-33651716)
chr1 (384-445)||(44417797-44417858)
[»] chr6 (1 HSPs)
chr6 (368-444)||(2732920-2732996)
[»] chr8 (3 HSPs)
chr8 (789-896)||(6516733-6516840)
chr8 (381-425)||(18737689-18737733)
chr8 (383-445)||(42843363-42843425)
[»] chr2 (1 HSPs)
chr2 (775-896)||(42673868-42673989)
[»] chr7 (1 HSPs)
chr7 (380-444)||(1110409-1110473)
[»] scaffold0491 (1 HSPs)
scaffold0491 (381-425)||(4388-4432)
[»] chr5 (1 HSPs)
chr5 (361-441)||(43283418-43283498)
[»] chr4 (1 HSPs)
chr4 (370-445)||(415131-415206)


Alignment Details
Target: chr3 (Bit Score: 551; Significance: 0; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 551; E-Value: 0
Query Start/End: Original strand, 341 - 899
Target Start/End: Complemental strand, 48236390 - 48235832
Alignment:
Q  341 aatataacggttatagtggtgctatggcactataacatagcgaaatttgaacaaatcgctgttatttcgggatatgctatttagtgtaaaatgttgtcaa 440  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  48236390 aatataacggttatagtggtgctatggcactataacatagcgaaatttgaacaaatcactgttatttcgggatatgctatttagtgtaaaatgttgtcaa 48236291  T
Q  441 atagtagcagcacgctataacattgttatgcagcggagtttgaacaaattgctattgacaacgtttgtttacctttttccacttcttaaactttgactgc 540  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48236290 atagtagcagcacgctataacattgttatgcagcggagtttgaacaaattgctattgacaacgtttgtttacctttttccacttcttaaactttgactgc 48236191  T
Q  541 cactcatctttttgttatgacaagaatatgtttacacaattatgacaatatactttttcctccttacgtgcacaggttgaggtactaagcagtattagac 640  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  48236190 cactcatctttttgttatgacaagaatatgtttacacaattatgacaatatactttttcctccttacatgcacaggttgaggtactaagcagtattagac 48236091  T
Q  641 atccaaatatggtcctcctccttggagcatgtcctgagcattgttgtttggtgtatgagtacatggaaaacggtaccttagaagatagattatttcggaa 740  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48236090 atccaaatatggtcctcctccttggagcatgtcctgagcattgttgtttggtgtatgagtacatggaaaacggtaccttagaagatagattatttcggaa 48235991  T
Q  741 aaataactctaagcctctatcatggcaaaaaaggttcaaaatagcagctgagattgcaactgcacttcttttccttcaccaaacaaagccagagccaatc 840  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48235990 aaataactctaagcctctatcatggcaaaaaaggttcaaaatagcagctgagattgcaactgcacttcttttccttcaccaaacaaagccagagccaatc 48235891  T
Q  841 gtgcatcgagaccttaaaccatcaaacattttgttagacaaaaattacgtgagcaaagt 899  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48235890 gtgcatcgagaccttaaaccatcaaacattttgttagacaaaaattacgtgagcaaagt 48235832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 15 - 332
Target Start/End: Complemental strand, 48236735 - 48236418
Alignment:
Q  15 gagatgaaggctaggaaagaggcagaagagaggaataaagtattgaatgcattggctcaaaatgataatcgatatagaaaatacactatgatggagattg 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48236735 gagatgaaggctaggaaagaggcagaagagaggaataaagtattgaatgcattggctcaaaatgataatcgatatagaaaatacactatgatggagattg 48236636  T
Q  115 aagttgctaccgagagattctcaccatcaaagaaactaggtgaaggtggatatggacctgtgtttaaaggtcaccttcatcacacaccagttgcagtcaa 214  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  48236635 aagttgctaccgagagattctcaccatcaaagaaactaggtgaaggtggatacggacctgtgtttaaaggtcaccttcatcacacaccagttgcagtcaa 48236536  T
Q  215 actcttaaatcctgaagctgctcaaggcaggaagcaattcaaccaagaggtaatcatatgtatcaacattttttctttgtaccctaaatattaaccattt 314  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  48236535 actcttaaatcctgaagctgctcaaggcaggaagcaattcaaccaagaggtaatcatatgcatcaacattttttctttgtaccctaaatattaaccattt 48236436  T
Q  315 aataatgcaaattttccc 332  Q
    ||||||||||||||||||    
T  48236435 aataatgcaaattttccc 48236418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 385 - 443
Target Start/End: Original strand, 25252041 - 25252099
Alignment:
Q  385 atttgaacaaatcgctgttatttcgggatatgctatttagtgtaaaatgttgtcaaata 443  Q
    |||||||||||||||| || ||||| |||| ||||||||||  ||||||||||| ||||    
T  25252041 atttgaacaaatcgctcttgtttcgtgatacgctatttagtacaaaatgttgtctaata 25252099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 61; Significance: 1e-25; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 614 - 886
Target Start/End: Original strand, 3686383 - 3686655
Alignment:
Q  614 aggttgaggtactaagcagtattagacatccaaatatggtcctcctccttggagcatgtcctgagcattgttgtttggtgtatgagtacatggaaaacgg 713  Q
    ||||||||||| || |||  || |||||||| |||||||||||||||||||| |||||||  ||  || | |||||||| ||||| |||||||| || ||    
T  3686383 aggttgaggtattatgcaacataagacatcccaatatggtcctcctccttggtgcatgtcaagaatatggatgtttggtatatgaatacatggacaatgg 3686482  T
Q  714 taccttagaagatagattatttcggaaaaataactctaagcctctatcatggcaaaaaaggttcaaaatagcagctgagattgcaactgcacttcttttc 813  Q
    || ||||||||| ||||||||  | |||   ||| |    ||  |  |||||| |||| | ||| |||||||   ||| |||||||| ||||||||||||    
T  3686483 tagcttagaagacagattattaagaaaacgaaacacccctccaattccatggcgaaaacgtttcgaaatagcttatgaaattgcaacagcacttcttttc 3686582  T
Q  814 cttcaccaaacaaagccagagccaatcgtgcatcgagaccttaaaccatcaaacattttgttagacaaaaatt 886  Q
    |||||||||||||| |||||  |||| || ||| |||||||||||||| | |||||| | |||||||||||||    
T  3686583 cttcaccaaacaaaaccagaagcaattgttcatagagaccttaaaccagccaacattctcttagacaaaaatt 3686655  T

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Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 140 - 196
Target Start/End: Original strand, 3685864 - 3685920
Alignment:
Q  140 atcaaagaaactaggtgaaggtggatatggacctgtgtttaaaggtcaccttcatca 196  Q
    ||||| |||| ||||||||||||||||||||||||||||||||||||| ||| ||||    
T  3685864 atcaatgaaaataggtgaaggtggatatggacctgtgtttaaaggtcaacttgatca 3685920  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 384 - 445
Target Start/End: Complemental strand, 6026031 - 6025970
Alignment:
Q  384 aatttgaacaaatcgctgttatttcgggatatgctatttagtgtaaaatgttgtcaaatagt 445  Q
    ||||||||||||| | | || || || |||||||||||||||  ||||||||||||||||||    
T  6026031 aatttgaacaaatagttattgttccgcgatatgctatttagtacaaaatgttgtcaaatagt 6025970  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 412 - 445
Target Start/End: Original strand, 33651683 - 33651716
Alignment:
Q  412 atatgctatttagtgtaaaatgttgtcaaatagt 445  Q
    |||||||||||||| |||||||||||||||||||    
T  33651683 atatgctatttagtataaaatgttgtcaaatagt 33651716  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 384 - 445
Target Start/End: Original strand, 44417797 - 44417858
Alignment:
Q  384 aatttgaacaaatcgctgttatttcgggatatgctatttagtgtaaaatgttgtcaaatagt 445  Q
    |||||||||||| || | || ||| |||||||| ||||||||| ||| ||||||||||||||    
T  44417797 aatttgaacaaaccgttattgttttgggatatgttatttagtgcaaagtgttgtcaaatagt 44417858  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000009; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 368 - 444
Target Start/End: Original strand, 2732920 - 2732996
Alignment:
Q  368 cactataacatagcgaaatttgaacaaatcgctgttatttcgggatatgctatttagtgtaaaatgttgtcaaatag 444  Q
    ||||||| | ||| ||||||||||||||||||| || ||| | |||||||||||||||  |||||||||||||||||    
T  2732920 cactatagcgtagtgaaatttgaacaaatcgctattgttttgcgatatgctatttagtacaaaatgttgtcaaatag 2732996  T

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Target: chr8 (Bit Score: 40; Significance: 0.0000000000004; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 789 - 896
Target Start/End: Original strand, 6516733 - 6516840
Alignment:
Q  789 tgagattgcaactgcacttcttttccttcaccaaacaaagccagagccaatcgtgcatcgagaccttaaaccatcaaacattttgttagacaaaaattac 888  Q
    ||||||||| ||||  |||||||||||||||||| |||||||||| ||||| || ||||| ||  | ||||||  ||||||| | ||||||||||| |||    
T  6516733 tgagattgccactggccttcttttccttcaccaatcaaagccagatccaatagtacatcgtgatatgaaaccaggaaacattctcttagacaaaaactac 6516832  T
Q  889 gtgagcaa 896  Q
    || |||||    
T  6516833 gttagcaa 6516840  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 381 - 425
Target Start/End: Original strand, 18737689 - 18737733
Alignment:
Q  381 cgaaatttgaacaaatcgctgttatttcgggatatgctatttagt 425  Q
    |||||||||||||||| ||| || |||||||||||||||||||||    
T  18737689 cgaaatttgaacaaattgctattgtttcgggatatgctatttagt 18737733  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 383 - 445
Target Start/End: Original strand, 42843363 - 42843425
Alignment:
Q  383 aaatttgaacaaatcgctgttatttcgggatatgctatttagtgtaaaatgttgtcaaatagt 445  Q
    |||||||||||||| ||| || || ||||||| |||||| ||| |||| ||||||||||||||    
T  42843363 aaatttgaacaaattgctattgttccgggataagctattaagtataaattgttgtcaaatagt 42843425  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 775 - 896
Target Start/End: Original strand, 42673868 - 42673989
Alignment:
Q  775 ttcaaaatagcagctgagattgcaactgcacttcttttccttcaccaaacaaagccagagccaatcgtgcatcgagaccttaaaccatcaaacattttgt 874  Q
    |||||||||||| | |||||||| || |  ||||||||||||||||| ||||| ||||| ||  | |||||||| || || |||||| |||||||| | |    
T  42673868 ttcaaaatagcatcagagattgcgacaggccttcttttccttcaccagacaaaaccagaaccggttgtgcatcgcgatctcaaaccagcaaacattctct 42673967  T
Q  875 tagacaaaaattacgtgagcaa 896  Q
    |||||| ||| ||||| |||||    
T  42673968 tagacagaaactacgtaagcaa 42673989  T

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Target: chr7 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 380 - 444
Target Start/End: Complemental strand, 1110473 - 1110409
Alignment:
Q  380 gcgaaatttgaacaaatcgctgttatttcgggatatgctatttagtgtaaaatgttgtcaaatag 444  Q
    ||||||||||||||||| ||| || |||||||||||||||||||||   || |||||||||||||    
T  1110473 gcgaaatttgaacaaattgctattgtttcgggatatgctatttagttctaagtgttgtcaaatag 1110409  T

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Target: scaffold0491 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: scaffold0491
Description:

Target: scaffold0491; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 381 - 425
Target Start/End: Original strand, 4388 - 4432
Alignment:
Q  381 cgaaatttgaacaaatcgctgttatttcgggatatgctatttagt 425  Q
    |||||||||||||||| ||| || |||||||||||||||||||||    
T  4388 cgaaatttgaacaaattgctattgtttcgggatatgctatttagt 4432  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 361 - 441
Target Start/End: Complemental strand, 43283498 - 43283418
Alignment:
Q  361 gctatggcactataacatagcgaaatttgaacaaatcgctgttatttcgggatatgctatttagtgtaaaatgttgtcaaa 441  Q
    ||||| |||||||| ||||||| |||||||||||||||||||| || ||  ||| ||||||| |   ||||||||||||||    
T  43283498 gctatagcactatagcatagcgtaatttgaacaaatcgctgttgttccgcaatacgctatttgggacaaaatgttgtcaaa 43283418  T

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Target: chr4 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 370 - 445
Target Start/End: Original strand, 415131 - 415206
Alignment:
Q  370 ctataacatagcgaaatttgaacaaatcgctgttatttcgggatatgctatttagtgtaaaatgttgtcaaatagt 445  Q
    ||||| ||||||  ||||||||||| ||||| || ||||| ||| |||||||||||  |||||||||| |||||||    
T  415131 ctatagcatagcagaatttgaacaagtcgctattgtttcgtgatttgctatttagtacaaaatgttgtgaaatagt 415206  T

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