View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12977_low_40 (Length: 272)
Name: NF12977_low_40
Description: NF12977
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12977_low_40 |
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Alignment Details
Target: chr5 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 11 - 256
Target Start/End: Original strand, 17774911 - 17775156
Alignment:
| Q |
11 |
cacagaagaaggtccacgtaccatcaactccttacaacgaatagcagcaagcttaacgactctttcgagctccacattccaactcaaacacagtgaatga |
110 |
Q |
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| T |
17774911 |
cacagaagaaggaccacgtaccatcaactccttacaacgaataacatcaagcttaacgactctttcgagctccacattccaactcaaacatagtgaatga |
17775010 |
T |
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| Q |
111 |
aatcacattgagtacatgaccatttctagccatacagtctcaattcaatcgtgaagcatcgaaacaaattaaagcacaaccacaaattattcaaaagaag |
210 |
Q |
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| T |
17775011 |
aatcacattgagtacataaccatttctagccatacagtctcaattcaatcatgaagcattgaaacaaattaaagcacaaccccaaattattcaaaagaag |
17775110 |
T |
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| Q |
211 |
tgtctgagtacaaattggatttgaaactggatctgtaacacgaaac |
256 |
Q |
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| T |
17775111 |
tgttggagtacaaattggatttgaaactggatctgtaacacgaaac |
17775156 |
T |
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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 50 - 110
Target Start/End: Original strand, 25125491 - 25125551
Alignment:
| Q |
50 |
aatagcagcaagcttaacgactctttcgagctccacattccaactcaaacacagtgaatga |
110 |
Q |
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| T |
25125491 |
aatagcaacaagcttaacgaccctttcgagccccacaatccaaaccaaacaaagtgaatga |
25125551 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 110
Target Start/End: Original strand, 2900649 - 2900730
Alignment:
| Q |
28 |
gtaccatcaactccttacaacgaatagcagcaagcttaacgactctttcgagctccacattccaactcaaacacagtgaatga |
110 |
Q |
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| T |
2900649 |
gtaccatcaactccctacaac-aatggcagcaagctaaacgaccatttcgagcctcacagtccaaatcaaacgaagtgaatga |
2900730 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 28 - 109
Target Start/End: Complemental strand, 33440414 - 33440334
Alignment:
| Q |
28 |
gtaccatcaactccttacaacgaatagcagcaagcttaacgactctttcgagctccacattccaactcaaacacagtgaatg |
109 |
Q |
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||||| |||||||| |||||| |||||||||||| | |||||| ||||||||| |||| ||||| ||| ||| |||||||| |
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| T |
33440414 |
gtaccttcaactccctacaac-aatagcagcaagttaaacgaccctttcgagccgcacaatccaaatcacacaaagtgaatg |
33440334 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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