View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12977_low_42 (Length: 248)
Name: NF12977_low_42
Description: NF12977
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12977_low_42 |
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Alignment Details
Target: chr5 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 35163309 - 35163077
Alignment:
| Q |
1 |
ttggaggttatatttaatatttaatgtttcaatcatcaatcaaccggtagttaagtgaattatttggcggttgttctttgtttaccacctgtgaagtggg |
100 |
Q |
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| T |
35163309 |
ttggaggttatatttaatatttaatgtttcaatca---atcaactggtagttaagtgaattatttggcggttgttctttgtttacc---tgtgaagtggg |
35163216 |
T |
|
| Q |
101 |
attgaaattattttagaagagacaaagtaggagttgataaattagtttttcctgttttatttagatttagagacacaaggtttaaataatttggcttggt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| |
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| T |
35163215 |
attgaaattattttagaagagacaaagtaggagttgataaattagtttttcctgttttatttagatttagagacacaaggtttaaataat-----taggt |
35163121 |
T |
|
| Q |
201 |
aaagaatttgtcacatgttaaatatgagtaatgagtataatcta |
244 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
35163120 |
aaagaatttgtcacatgttaaatatgagtgatgagtataatcta |
35163077 |
T |
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