View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12977_low_46 (Length: 238)
Name: NF12977_low_46
Description: NF12977
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12977_low_46 |
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Alignment Details
Target: chr8 (Bit Score: 123; Significance: 3e-63; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 1 - 151
Target Start/End: Complemental strand, 11079809 - 11079659
Alignment:
| Q |
1 |
aatgccactaacctcagaagcattgttttgatggacactcttagaaaatgcaacggcctcatttctggtataagcaaccgatgatggaaacgtcacccat |
100 |
Q |
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| T |
11079809 |
aatgccactaacctcagaagcattgttttgatggacactcttagaaaatgcaattgcctcatttctggtataagcaaccgatgatgtttccgtcacccat |
11079710 |
T |
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| Q |
101 |
ttaggtggcgatgttaaactctctggcgagaagcgagctttcattgtatta |
151 |
Q |
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| T |
11079709 |
ttgggtggcgatgttaaactctctggcgagaagcgagctttcattgtatta |
11079659 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 5 - 136
Target Start/End: Complemental strand, 1652999 - 1652868
Alignment:
| Q |
5 |
ccactaacctcagaagcattgttttgatggacactcttagaaaatgcaacggcctcatttctggtataagcaaccgatgatggaaacgtcacccatttag |
104 |
Q |
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| T |
1652999 |
ccactaacctcagaagcattgttttgatggacatacttagaaaatgccactgcctcagttctgttataagcaactgatgatggaaatgtcatccatttcg |
1652900 |
T |
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| Q |
105 |
gtggcgatgttaaactctctggcgagaagcga |
136 |
Q |
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| T |
1652899 |
gtggcaatgttaaactgtctggcgagaagcga |
1652868 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 5 - 136
Target Start/End: Complemental strand, 1741375 - 1741244
Alignment:
| Q |
5 |
ccactaacctcagaagcattgttttgatggacactcttagaaaatgcaacggcctcatttctggtataagcaaccgatgatggaaacgtcacccatttag |
104 |
Q |
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| T |
1741375 |
ccactaacctcagaagcattgttttgatggacatacttagaaaatgccactgcctcagttctgttataagcaactgatgatggaaatgtcatccatttcg |
1741276 |
T |
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| Q |
105 |
gtggcgatgttaaactctctggcgagaagcga |
136 |
Q |
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| T |
1741275 |
gtggcaatgttaaactgtctggcgagaagcga |
1741244 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 5 - 136
Target Start/End: Original strand, 28001694 - 28001824
Alignment:
| Q |
5 |
ccactaacctcagaagcattgttttgatggacactcttagaaaatgcaacggcctcatttctggtataagcaaccgatgatggaaacgtcacccatttag |
104 |
Q |
| |
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||||||||||||||| ||||||||||||||||| |||||||||||| || |||||| ||||| |||||||||| ||| ||||||| |||| |||||| | |
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| T |
28001694 |
ccactaacctcagaaccattgttttgatggacatacttagaaaatgccactgcctcagttctgttataagcaactgataatggaaatgtcatccatttcg |
28001793 |
T |
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| Q |
105 |
gtggcgatgttaaactctctggcgagaagcga |
136 |
Q |
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| T |
28001794 |
gtggcaatgttaaactgtctgg-gagaagcga |
28001824 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 151 - 222
Target Start/End: Complemental strand, 12228985 - 12228917
Alignment:
| Q |
151 |
atatatacacgaaccattaattaccaccatcttaatcaaggaatacataaagaaatttaccacccatcttac |
222 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| || | ||||| |||||||||||||||||||| |
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| T |
12228985 |
atatatacacgaaccattaattaccaccatcttaat---tcaaaaaataaataaatttaccacccatcttac |
12228917 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 151 - 222
Target Start/End: Complemental strand, 45100805 - 45100737
Alignment:
| Q |
151 |
atatatacacgaaccattaattaccaccatcttaatcaaggaatacataaagaaatttaccacccatcttac |
222 |
Q |
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|||||||||| ||||||||||||||||||||||||| || | ||||| |||||||||||||||||||| |
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| T |
45100805 |
atatatacacaaaccattaattaccaccatcttaat---tcaaaaaataaataaatttaccacccatcttac |
45100737 |
T |
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