View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12977_low_48 (Length: 231)
Name: NF12977_low_48
Description: NF12977
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12977_low_48 |
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Alignment Details
Target: chr6 (Bit Score: 197; Significance: 1e-107; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 213
Target Start/End: Original strand, 34820244 - 34820456
Alignment:
| Q |
1 |
gctctcgtcaacaaaactactattatattcagcttcgtctgatttgccgtctgcgagttgatggtcaaccacaacttcgaaagccacctctgacgtacca |
100 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
34820244 |
gctctcgtcaacaaaactactattatattcagctttgtctgatttgtcgtctgcgagttgatggtcaaccacaacttccaaagccacctctgacgtacca |
34820343 |
T |
|
| Q |
101 |
aaatcattttttgtgatactctcgtcaacaaaacaactattattttcagcttcatctgatttatcttcagcgagctgatggtcaacctcaactttcaaaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
34820344 |
aaatcattttttgtgatactctcgtcaacaaaacaactattattttcagcttcatctgatttatcttccgcgagctgatggtcaacctcaactttcaaaa |
34820443 |
T |
|
| Q |
201 |
ccacctctgatgt |
213 |
Q |
| |
|
||||||||||||| |
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| T |
34820444 |
ccacctctgatgt |
34820456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 2 - 207
Target Start/End: Original strand, 34820362 - 34820567
Alignment:
| Q |
2 |
ctctcgtcaacaaaactactattatattcagcttcgtctgatttgccgtctgcgagttgatggtcaaccacaacttcgaaagccacctctgacgtaccaa |
101 |
Q |
| |
|
|||||||||||||||| |||||||| ||||||||| |||||||| | || ||||| |||||||||||| |||||| ||| |||||||||| ||||||| |
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| T |
34820362 |
ctctcgtcaacaaaacaactattattttcagcttcatctgatttatcttccgcgagctgatggtcaacctcaactttcaaaaccacctctgatgtaccaa |
34820461 |
T |
|
| Q |
102 |
aatcattttttgtgatactctcgtcaacaaaacaactattattttcagcttcatctgatttatcttcagcgagctgatggtcaacctcaactttcaaaac |
201 |
Q |
| |
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|||||||||| ||| ||||||||||||||||| | ||||||||| ||||||||||||||| || || |||||||||||||||| |||||||| |||||| |
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| T |
34820462 |
catcattttttatgacactctcgtcaacaaaactaatattatttttagcttcatctgatttgtcgtctgcgagctgatggtcaagctcaacttccaaaac |
34820561 |
T |
|
| Q |
202 |
cacctc |
207 |
Q |
| |
|
|||||| |
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| T |
34820562 |
cacctc |
34820567 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 5 - 206
Target Start/End: Original strand, 34820599 - 34820800
Alignment:
| Q |
5 |
tcgtcaacaaaactactattatattcagcttcgtctgatttgccgtctgcgagttgatggtcaaccacaacttcgaaagccacctctgacgtaccaaaat |
104 |
Q |
| |
|
|||||||||||||||||||||| || |||||| ||| | ||| | ||| | || ||||||| |||| || |||| |||||||||||||||||||||| || |
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| T |
34820599 |
tcgtcaacaaaactactattatttttagcttcatctaagttgtcatctacaagctgatggttaacctcagcttccaaagccacctctgacgtaccaatat |
34820698 |
T |
|
| Q |
105 |
cattttttgtgatactctcgtcaacaaaacaactattattttcagcttcatctgatttatcttcagcgagctgatggtcaacctcaactttcaaaaccac |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||| |||| || || |||||||||||| ||| ||||||| |||| |||| |
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| T |
34820699 |
cattttttgtgatactctcgtcaacaaaactactattattttcagcttcatctaatttgtcgtctacgagctgatggttaacttcaacttccaaagccac |
34820798 |
T |
|
| Q |
205 |
ct |
206 |
Q |
| |
|
|| |
|
|
| T |
34820799 |
ct |
34820800 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 2 - 157
Target Start/End: Original strand, 34820713 - 34820868
Alignment:
| Q |
2 |
ctctcgtcaacaaaactactattatattcagcttcgtctgatttgccgtctgcgagttgatggtcaaccacaacttcgaaagccacctctgacgtaccaa |
101 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||| ||| ||||| ||||| |||| ||||||| ||| ||||||| |||||||||| || | |||||| |
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| T |
34820713 |
ctctcgtcaacaaaactactattattttcagcttcatctaatttgtcgtctacgagctgatggttaacttcaacttccaaagccacctttgccttaccaa |
34820812 |
T |
|
| Q |
102 |
aatcattttttgtgatactctcgtcaacaaaacaactattattttcagcttcatct |
157 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||| ||||||||||| |
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|
| T |
34820813 |
catcattttttgtgatactctcgtcaacaaaactactattatttccagcttcatct |
34820868 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 2 - 210
Target Start/End: Original strand, 34820479 - 34820687
Alignment:
| Q |
2 |
ctctcgtcaacaaaactactattatattcagcttcgtctgatttgccgtctgcgagttgatggtcaaccacaacttcgaaagccacctctgacgtaccaa |
101 |
Q |
| |
|
|||||||||||||||||| |||||| || |||||| ||||||||| |||||||||| |||||||||| | ||||||| ||| ||||||| ||| |||| | |
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|
| T |
34820479 |
ctctcgtcaacaaaactaatattatttttagcttcatctgatttgtcgtctgcgagctgatggtcaagctcaacttccaaaaccacctccgacataccga |
34820578 |
T |
|
| Q |
102 |
aatcattttttgtgatactctcgtcaacaaaacaactattattttcagcttcatctgatttatcttcagcgagctgatggtcaacctcaactttcaaaac |
201 |
Q |
| |
|
|||| |||| |||||||| ||||||||||||| ||||||||||| |||||||||| | || || || | |||||||||| ||||||| ||| |||| | |
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|
| T |
34820579 |
catcaattttagtgatactttcgtcaacaaaactactattatttttagcttcatctaagttgtcatctacaagctgatggttaacctcagcttccaaagc |
34820678 |
T |
|
| Q |
202 |
cacctctga |
210 |
Q |
| |
|
||||||||| |
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|
| T |
34820679 |
cacctctga |
34820687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 53 - 210
Target Start/End: Original strand, 34820179 - 34820336
Alignment:
| Q |
53 |
gcgagttgatggtcaaccacaacttcgaaagccacctctgacgtaccaaaatcattttttgtgatactctcgtcaacaaaacaactattattttcagctt |
152 |
Q |
| |
|
|||||||||||||||||| || |||| |||| ||||| ||||||||||| || |||||||||||| |||||||||||||||| |||||||| |||||||| |
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| T |
34820179 |
gcgagttgatggtcaacctcagcttccaaagtcacctatgacgtaccaacattattttttgtgatgctctcgtcaacaaaactactattatattcagctt |
34820278 |
T |
|
| Q |
153 |
catctgatttatcttcagcgagctgatggtcaacctcaactttcaaaaccacctctga |
210 |
Q |
| |
|
|||||||| || || ||||| |||||||||||| |||||| |||| |||||||||| |
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|
| T |
34820279 |
tgtctgatttgtcgtctgcgagttgatggtcaaccacaacttccaaagccacctctga |
34820336 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 93 - 134
Target Start/End: Original strand, 34819943 - 34819984
Alignment:
| Q |
93 |
acgtaccaaaatcattttttgtgatactctcgtcaacaaaac |
134 |
Q |
| |
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|||||||| ||||||||| |||||||||||||||||||||| |
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|
| T |
34819943 |
acgtaccatcatcatttttggtgatactctcgtcaacaaaac |
34819984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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