View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12977_low_5 (Length: 747)
Name: NF12977_low_5
Description: NF12977
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12977_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 702; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 702; E-Value: 0
Query Start/End: Original strand, 10 - 731
Target Start/End: Original strand, 31550690 - 31551411
Alignment:
| Q |
10 |
ataatactatgcatcatgtaaatctgttagaacagaaaccctggttcaaaagtaaatatatacgaaaaatgcagacagggaacacgagatttgatcacag |
109 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
31550690 |
ataatactatgcatcatgtaaatctgttagaacagaaaccctggttcaaaagtaaatatatacgaaaaatgcagacagagaacacgagatttgatcacag |
31550789 |
T |
|
| Q |
110 |
aattcggtcaattctgcatacacatccgattgcagtacctttctgttattcaaatttaaggttataagttgtgtttaaatactgtccagtttacaataat |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31550790 |
aattcggtcaattctgcatacacatccgattgcagtacctttctgttattcaaatttaaggttataagttgtgtttaaatactgtccagtttacaataat |
31550889 |
T |
|
| Q |
210 |
acatgtccacttgtgagtaaactatgagcaaataaaccacagagctatcaaccatatacattgaacttgatattatatcccttaattttaaattcaaata |
309 |
Q |
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|
||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31550890 |
acatgtccacttgtgagtaaactatgagcaaataacccacaaagctatcaaccatatacattgaacttgatattatatcccttaattttaaattcaaata |
31550989 |
T |
|
| Q |
310 |
tacctatatttataagcatatgaacttaacgtcaacaaaatttcaaacttgaactgaccttataattaaacctttctttctttttggctttttcatttaa |
409 |
Q |
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|
||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31550990 |
tacctatatttataaccatatgaacttaacgacaacaaaatttcaaacttgaactgaccttataattaaacctttctttctttttggctttttcatttaa |
31551089 |
T |
|
| Q |
410 |
caatgcttctacatcttctcttgtgaactctattacaccataatccgatccagcattgcttggaggagcactacttaggccaacatcgtgtccgccattt |
509 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31551090 |
caatgcttctacatcttctcttgtgaactctattacaccataatccgatccagcattgcttggaggagcactacttaggccaacatcgtgtccgccattt |
31551189 |
T |
|
| Q |
510 |
acaactgttaaagcttgccttattcttccatttatcggagtctccaccattgtttctaagcagttgttatctcccacaaaattctgaaacttgaataaca |
609 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31551190 |
acaactgttaaagcttgccttattcttccatttatcggagtctccaccattgtttctaagcagttgttatctcccacaaaattctgaaacttgaataaca |
31551289 |
T |
|
| Q |
610 |
aaagaacattaagatcacatttttaagcatgatagtgcaatgaagcagaggaacaagaacatcccagaatttaaaatgaggtgaagatggaaagtaaatg |
709 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31551290 |
aaagaacattaagatcacatttttaagcatgatagtgcaatgaagcagaggaacaagaacatcccagaatttaaaatgaggtgaagatggaaagtaaatg |
31551389 |
T |
|
| Q |
710 |
ttaggaaatgagaaaagagagt |
731 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
31551390 |
ttaggaaatgagaaaagagagt |
31551411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 33 - 75
Target Start/End: Original strand, 23033384 - 23033426
Alignment:
| Q |
33 |
ctgttagaacagaaaccctggttcaaaagtaaatatatacgaa |
75 |
Q |
| |
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|||||||||||||||||||||||||||| ||||| ||||||| |
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|
| T |
23033384 |
ctgttagaacagaaaccctggttcaaaataaaatagatacgaa |
23033426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 36 - 86
Target Start/End: Original strand, 34411173 - 34411223
Alignment:
| Q |
36 |
ttagaacagaaaccctggttcaaaagtaaatatatacgaaaaatgcagaca |
86 |
Q |
| |
|
||||| ||| || ||||||||||||||||| |||||||||||| ||||||| |
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|
| T |
34411173 |
ttagatcagcaaacctggttcaaaagtaaacatatacgaaaaacgcagaca |
34411223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000007; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 36 - 94
Target Start/End: Original strand, 33717198 - 33717256
Alignment:
| Q |
36 |
ttagaacagaaaccctggttcaaaagtaaatatatacgaaaaatgcagacagggaacac |
94 |
Q |
| |
|
|||||||| |||||| ||||||||||||| | |||||||||||||| |||| |||||| |
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|
| T |
33717198 |
ttagaacaacaaccctagttcaaaagtaaacagatacgaaaaatgcaaacagagaacac |
33717256 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 79
Target Start/End: Complemental strand, 1498078 - 1498033
Alignment:
| Q |
34 |
tgttagaacagaaaccctggttcaaaagtaaatatatacgaaaaat |
79 |
Q |
| |
|
||||||||||| |||||||||||||||| ||| | ||||||||||| |
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| T |
1498078 |
tgttagaacagtaaccctggttcaaaagaaaacagatacgaaaaat |
1498033 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 94
Target Start/End: Complemental strand, 6263066 - 6263005
Alignment:
| Q |
33 |
ctgttagaacagaaaccctggttcaaaagtaaatatatacgaaaaatgcagacagggaacac |
94 |
Q |
| |
|
||||||||||| || ||||||||||||| ||||| |||||||||| ||| |||| |||||| |
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|
| T |
6263066 |
ctgttagaacaacaatcctggttcaaaagaaaatagatacgaaaaacgcaaacagagaacac |
6263005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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