View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12977_low_50 (Length: 215)
Name: NF12977_low_50
Description: NF12977
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12977_low_50 |
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Alignment Details
Target: chr7 (Bit Score: 177; Significance: 1e-95; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 6 - 198
Target Start/End: Complemental strand, 48650099 - 48649907
Alignment:
| Q |
6 |
aggaggagcagagatgggagaagaccttggacgacgagcaccaagagaagcgatattgcagttggctcgtcgaccattgatgatcacagttggttcctcg |
105 |
Q |
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| T |
48650099 |
aggaggaggagtgatgggagaagaccttggacgacgagcaccaagagaagcgatattgcagttggctcgtcgaccattgatgatcacagttggttcctcg |
48650000 |
T |
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| Q |
106 |
caagccttctttgcagcctctgcatctttgaatgttacaaatccataccctttggatctgccggtaaccttatcagaaattatgacagcttca |
198 |
Q |
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| T |
48649999 |
caagccttctttgcagaatctgcatctttgaatgttacaaatccataccctttggatctgccggtaaccttatcagaaattatgacagcttca |
48649907 |
T |
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Target: chr4 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 79 - 139
Target Start/End: Original strand, 41290736 - 41290796
Alignment:
| Q |
79 |
ccattgatgatcacagttggttcctcgcaagccttctttgcagcctctgcatctttgaatg |
139 |
Q |
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| T |
41290736 |
ccattgatgttcacacttggttcctcgcaagccttatttgctgcctctgcttccttgaatg |
41290796 |
T |
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