View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12977_low_53 (Length: 207)

Name: NF12977_low_53
Description: NF12977
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12977_low_53
NF12977_low_53
[»] chr5 (1 HSPs)
chr5 (1-207)||(39184801-39185007)
[»] chr1 (3 HSPs)
chr1 (1-89)||(42373538-42373626)
chr1 (29-93)||(19597952-19598016)
chr1 (23-91)||(41919898-41919966)
[»] chr2 (2 HSPs)
chr2 (23-98)||(31902961-31903036)
chr2 (1-127)||(39339385-39339512)
[»] chr8 (4 HSPs)
chr8 (29-91)||(34866640-34866702)
chr8 (4-83)||(10551752-10551832)
chr8 (6-96)||(9519052-9519143)
chr8 (23-91)||(34389590-34389658)
[»] chr7 (4 HSPs)
chr7 (29-91)||(38484991-38485053)
chr7 (1-91)||(37792747-37792838)
chr7 (29-98)||(3420242-3420311)
chr7 (23-91)||(38305676-38305744)
[»] chr4 (2 HSPs)
chr4 (1-97)||(16501182-16501279)
chr4 (23-91)||(30963879-30963947)
[»] chr6 (1 HSPs)
chr6 (1-91)||(12793553-12793644)
[»] chr3 (1 HSPs)
chr3 (23-93)||(17501810-17501880)


Alignment Details
Target: chr5 (Bit Score: 175; Significance: 2e-94; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 1 - 207
Target Start/End: Original strand, 39184801 - 39185007
Alignment:
Q  1 aacagacagcaacacaaaacatatctataggaagacgaaacacaactacaaaacatgggcaacgacgccagtttgaagcggaatcacaacctaaatcaga 100  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||    
T  39184801 aacagacagcaacacaaaacatatatataggaagacgaaacacaactacaaaacataggcaacgacgccagtttgaagcagaatcacaacctaaatcaga 39184900  T
Q  101 gaaatgcagctgccggtgacatggagaaaacgtatgtcgccggagtaaacaaccaaccccattaacctgcggaactgacccaatcgaagccgatctcagc 200  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||| ||| ||||| |||||||||    
T  39184901 gaaatgcagctgccggtgacatggagaaaacatatgtcgccggagtaaacaaccaaccccatgaacctgcggaactgaccgaatggaagctgatctcagc 39185000  T
Q  201 aacaaaa 207  Q
    |||||||    
T  39185001 aacaaaa 39185007  T

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Target: chr1 (Bit Score: 49; Significance: 3e-19; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 42373626 - 42373538
Alignment:
Q  1 aacagacagcaacacaaaacatatctataggaagacgaaacacaactacaaaacatgggcaacgacgccagtttgaagcggaatcacaa 89  Q
    ||||| ||| |||| | |||| ||| ||||||||||||||||||||| ||||||| |||||||||| || |||||||||||||||||||    
T  42373626 aacaggcagtaacatagaacagatcgataggaagacgaaacacaacttcaaaacacgggcaacgacaccggtttgaagcggaatcacaa 42373538  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 93
Target Start/End: Complemental strand, 19598016 - 19597952
Alignment:
Q  29 aggaagacgaaacacaactacaaaacatgggcaacgacgccagtttgaagcggaatcacaaccta 93  Q
    ||||||| ||||| |||| ||| |||| ||||||||||||| || ||||| |||| |||||||||    
T  19598016 aggaagatgaaacccaacaacagaacacgggcaacgacgccggtctgaagtggaaacacaaccta 19597952  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 91
Target Start/End: Complemental strand, 41919966 - 41919898
Alignment:
Q  23 atctataggaagacgaaacacaactacaaaacatgggcaacgacgccagtttgaagcggaatcacaacc 91  Q
    ||||| ||||||| ||||  | || |||||||| ||||||||||||  ||||||||||||| |||||||    
T  41919966 atctagaggaagatgaaatcccacaacaaaacacgggcaacgacgctggtttgaagcggaaccacaacc 41919898  T

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Target: chr2 (Bit Score: 44; Significance: 3e-16; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 23 - 98
Target Start/End: Original strand, 31902961 - 31903036
Alignment:
Q  23 atctataggaagacgaaacacaactacaaaacatgggcaacgacgccagtttgaagcggaatcacaacctaaatca 98  Q
    ||||| ||||||||||||| |||| |||||||| ||||| ||||||| ||||||||||||| ||||||||| ||||    
T  31902961 atctagaggaagacgaaacccaacaacaaaacacgggcagcgacgccggtttgaagcggaaacacaacctagatca 31903036  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 127
Target Start/End: Original strand, 39339385 - 39339512
Alignment:
Q  1 aacagacagcaacacaaa-acatatctataggaagacgaaacacaactacaaaacatgggcaacgacgccagtttgaagcggaatcacaacctaaatcag 99  Q
    |||||||||||||||||| | | ||||| ||||||| ||||  |||| |||||||| | ||| ||||| | |||||||| | || ||||||| ||||||     
T  39339385 aacagacagcaacacaaatatagatctagaggaagaggaaatccaacaacaaaacacgagcagcgacgtcggtttgaagtgaaaacacaaccaaaatcat 39339484  T
Q  100 agaaatgcagctgccggtgacatggaga 127  Q
    ||||| || || |||||||||| |||||    
T  39339485 agaaaggcggccgccggtgacaaggaga 39339512  T

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Target: chr8 (Bit Score: 35; Significance: 0.00000000007; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 29 - 91
Target Start/End: Original strand, 34866640 - 34866702
Alignment:
Q  29 aggaagacgaaacacaactacaaaacatgggcaacgacgccagtttgaagcggaatcacaacc 91  Q
    ||||||||||||  |||| |||||||| ||||| ||||||| ||||||||||||| |||||||    
T  34866640 aggaagacgaaatccaacaacaaaacacgggcagcgacgccggtttgaagcggaaccacaacc 34866702  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 83
Target Start/End: Complemental strand, 10551832 - 10551752
Alignment:
Q  4 agacagcaacacaaa-acatatctataggaagacgaaacacaactacaaaacatgggcaacgacgccagtttgaagcggaa 83  Q
    ||||||||||||||| | | ||||| ||||||||||||| |||| ||||| || ||||| |||||||  ||||||||||||    
T  10551832 agacagcaacacaaacatagatctagaggaagacgaaacccaacaacaaagcacgggcagcgacgccgatttgaagcggaa 10551752  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 6 - 96
Target Start/End: Complemental strand, 9519143 - 9519052
Alignment:
Q  6 acagcaacacaaa-acatatctataggaagacgaaacacaactacaaaacatgggcaacgacgccagtttgaagcggaatcacaacctaaat 96  Q
    ||||||| ||||| ||| ||||| || |||||||||| |||| |||||||| ||||| ||||||  ||||||||||| | ||||||| ||||    
T  9519143 acagcaatacaaacacaaatctagagaaagacgaaacccaacaacaaaacacgggcagcgacgctggtttgaagcgggaacacaacccaaat 9519052  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 91
Target Start/End: Original strand, 34389590 - 34389658
Alignment:
Q  23 atctataggaagacgaaacacaactacaaaacatgggcaacgacgccagtttgaagcggaatcacaacc 91  Q
    ||||| |||| |||||||  | || |||||||| ||||| ||||||| ||||||||||||| |||||||    
T  34389590 atctagaggaggacgaaattccacaacaaaacacgggcagcgacgccggtttgaagcggaagcacaacc 34389658  T

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Target: chr7 (Bit Score: 35; Significance: 0.00000000007; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 29 - 91
Target Start/End: Complemental strand, 38485053 - 38484991
Alignment:
Q  29 aggaagacgaaacacaactacaaaacatgggcaacgacgccagtttgaagcggaatcacaacc 91  Q
    |||||||||||||   || |||||||||||||| ||||||| ||||||||||||| |||||||    
T  38485053 aggaagacgaaacctgacaacaaaacatgggcagcgacgccggtttgaagcggaaacacaacc 38484991  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 37792838 - 37792747
Alignment:
Q  1 aacagacagcaacacaaa-acatatctataggaagacgaaacacaactacaaaacatgggcaacgacgccagtttgaagcggaatcacaacc 91  Q
    |||||||||||||||||| ||  ||| | || |||| ||||| ||||  ||||||| || |||||||||| ||||||||||||| |||||||    
T  37792838 aacagacagcaacacaaacacggatcaagagaaagatgaaacccaacagcaaaacacggacaacgacgccggtttgaagcggaaacacaacc 37792747  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 29 - 98
Target Start/End: Original strand, 3420242 - 3420311
Alignment:
Q  29 aggaagacgaaacacaactacaaaacatgggcaacgacgccagtttgaagcggaatcacaacctaaatca 98  Q
    |||||||||||||  ||| |||||||| | ||| ||||||| ||| ||||||||| ||||||||| ||||    
T  3420242 aggaagacgaaaccaaacaacaaaacacgagcagcgacgccggttcgaagcggaaccacaacctagatca 3420311  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 91
Target Start/End: Complemental strand, 38305744 - 38305676
Alignment:
Q  23 atctataggaagacgaaacacaactacaaaacatgggcaacgacgccagtttgaagcggaatcacaacc 91  Q
    ||||| ||||||||||||  |||| ||||||||  |||| | ||||| ||||||||||||| |||||||    
T  38305744 atctagaggaagacgaaatccaacaacaaaacacaggcagcaacgccggtttgaagcggaaccacaacc 38305676  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 16501279 - 16501182
Alignment:
Q  1 aacagacagcaacacaaa-acatatctataggaagacgaaacacaactacaaaacatgggcaacgacgccagtttgaagcggaatcacaacctaaatc 97  Q
    ||||||| || ||||||| ||| || || |||||||| |||  |||| ||| |||||||||| ||||||| |||||||| |||||||||||| |||||    
T  16501279 aacagacggccacacaaacacaaatttagaggaagactaaaaccaacaacacaacatgggcagcgacgccggtttgaagtggaatcacaacccaaatc 16501182  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 23 - 91
Target Start/End: Complemental strand, 30963947 - 30963879
Alignment:
Q  23 atctataggaagacgaaacacaactacaaaacatgggcaacgacgccagtttgaagcggaatcacaacc 91  Q
    ||||| ||||||||||||  |||| |||||||| ||||| ||||||| |||||||| |||| |||||||    
T  30963947 atctagaggaagacgaaatccaaccacaaaacacgggcatcgacgccggtttgaagtggaaccacaacc 30963879  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 12793644 - 12793553
Alignment:
Q  1 aacagacagcaacacaaaac-atatctataggaagacgaaacacaactacaaaacatgggcaacgacgccagtttgaagcggaatcacaacc 91  Q
    ||||||||||||||||||   | ||| | ||||||||||||  || |  ||||||| |||||||||||||||||||||||| || |||||||    
T  12793644 aacagacagcaacacaaatttagatccagaggaagacgaaatccatcaccaaaacacgggcaacgacgccagtttgaagcgaaaacacaacc 12793553  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 93
Target Start/End: Original strand, 17501810 - 17501880
Alignment:
Q  23 atctataggaagacgaaacacaactacaaaacatgggcaacgacgccagtttgaagcggaatcacaaccta 93  Q
    ||||| ||||||||||||   ||| |||||||| || ||| |||| ||||||||||||||| |||||||||    
T  17501810 atctagaggaagacgaaatctaacaacaaaacacggacaatgacgtcagtttgaagcggaaacacaaccta 17501880  T

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