View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12977_low_6 (Length: 678)
Name: NF12977_low_6
Description: NF12977
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12977_low_6 |
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Alignment Details
Target: chr6 (Bit Score: 535; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 535; E-Value: 0
Query Start/End: Original strand, 10 - 660
Target Start/End: Original strand, 32404212 - 32404850
Alignment:
| Q |
10 |
attatactatcacacatccttatgatcttagaccacaaaccaaacttgattgtcttatatatcttacacattattataaaggtcttctt---atgtaaat |
106 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||| ||||||||||||||| |||||||| |
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| T |
32404212 |
attatactatcacacatccttatgatcttagaccacaaatcaaacttgattgtcttatac--cttacacattaatataaaggtcttcttcttatgtaaat |
32404309 |
T |
|
| Q |
107 |
aaaaaattagcttcacaagagatattcaagcaagctgaagacatacctcatctccttcctaagctaagtaaaggctgcttgcctttccatggccactaaa |
206 |
Q |
| |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
32404310 |
aaaaaattagcttcataagagatattcaagcaagctgaagacatacctcatctccttgctaagctaagtaaaggctgcttgcctttccatggccactaaa |
32404409 |
T |
|
| Q |
207 |
taatatggtaaatctttctttatcatagtatacaaacttcaaaccataaagaaatagttatgcagtgcattatcttctgaattaatatacttctatagtt |
306 |
Q |
| |
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|| |||||||||||||| |||||| ||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||| |||| |
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| T |
32404410 |
tagtatggtaaatcttt----atcata-tatacaaacttcacaccataaagaaatagttatgtagtgcattatcttctgaattaatatactcctat---- |
32404500 |
T |
|
| Q |
307 |
ctatgcaagagaactcattaagttcagccatcaaaatcattccaccatgtgatcctttacaactctttgaataggcattcgataagtgcatctaattttg |
406 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32404501 |
----gcaagagaactcattaagttcagccatcaaaatcattccaccatgtgatcctgtacaactctttgaataggcattcgataagtgcatctaattttg |
32404596 |
T |
|
| Q |
407 |
atgcaaacccacttagaaaatgttaacagttgaattgttagaagaatgtactaacattcataataaaatccataacttttccaatatctatcaatttaat |
506 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32404597 |
atgcaaacccacttagaaaatgttaacagttgaattgttagaagaatgtactaacattcataataaaatccataacttttccaatatctatcaatttaat |
32404696 |
T |
|
| Q |
507 |
atatttgaattcaagatgaatcaaaataaatttagtatgttgcaaaatagaaatggaaccaaagcatataacttttttcagtcatgttatgttctgtttt |
606 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32404697 |
atatttgaattcaagatgaatcaaaataaatttagtatgttgcaaaatagaaatggaaccaaagcatataacttttttcagtcatgttatgttctgtttt |
32404796 |
T |
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| Q |
607 |
gctctgtatatgaactaaatgatttacaagactatataaatttaagcaacatca |
660 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32404797 |
gctctgtatatgaactaaatgatttacaagactatataaatttaagcaacatca |
32404850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 325; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 10 - 534
Target Start/End: Complemental strand, 8364361 - 8363849
Alignment:
| Q |
10 |
attatactatcacacatccttatgatcttagaccacaaaccaaacttgattgtcttatatatcttacacattattataaaggtcttctt---atgtaaat |
106 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| ||||||||||| ||||||||||||||| |||||||| |
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| T |
8364361 |
attatactatcacacatccttatgatcttagaccacaaatcaaacttgattatcttatac--cttacacattaatataaaggtcttcttcttatgtaaat |
8364264 |
T |
|
| Q |
107 |
aaaaaattagcttcacaagagatattcaagcaagctgaagacatacctcatctccttcctaagctaagtaaaggctgcttgcctttccatggccactaaa |
206 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| |
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| T |
8364263 |
aaaaaattagcttcataagagatattcaagcaagctgaagacatacctcatctccttgctaagctaagtaaaggctgcttgcctttccatgcccactaaa |
8364164 |
T |
|
| Q |
207 |
taatatggtaaatctttctttatcatagtatacaaacttcaaaccataaagaaatagttatgcagtgcattatcttctgaattaatatacttctatagtt |
306 |
Q |
| |
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|| |||||||||| |||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| |||||||||||| | |
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| T |
8364163 |
tagtatggtaaat----ctttatcatagtatacaaacttcacaccataaagaaatagttatgtagtgcattatcttccgaattaatatac--------tc |
8364076 |
T |
|
| Q |
307 |
ctatgcaagagaactcattaagttcagccatcaaaatcattccaccatgtgatcctttacaactctttgaataggcattcgataagtgcatctaattttg |
406 |
Q |
| |
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|||||||| |||||||||||||||||||| |||||||||||||||||||||||||| || | | |||| || |||||||||||||||||||||| |||| |
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| T |
8364075 |
ctatgcaacagaactcattaagttcagccgtcaaaatcattccaccatgtgatcctgtaaatttttttggatgggcattcgataagtgcatctaa-tttg |
8363977 |
T |
|
| Q |
407 |
atgcaaacccacttagaaaatgttaacagttgaattgttagaagaatgtactaacattcataataaaatccataacttttccaatatctatcaatttaat |
506 |
Q |
| |
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||||| | |||||| || ||| ||| |||||||||||||||||||||||| ||| ||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
8363976 |
atgcatatccactttgacaatactaaaagttgaattgttagaagaatgtaccaaccttcataataaaatccataaattttccaatatctatcaatttaat |
8363877 |
T |
|
| Q |
507 |
atatttgaattcaagatgaatcaaaata |
534 |
Q |
| |
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|||||||||||||||||||||||||||| |
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| T |
8363876 |
atatttgaattcaagatgaatcaaaata |
8363849 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 275; Significance: 1e-153; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 275; E-Value: 1e-153
Query Start/End: Original strand, 10 - 520
Target Start/End: Complemental strand, 43655400 - 43654902
Alignment:
| Q |
10 |
attatactatcacacatccttatgatcttagaccacaaaccaaacttgattgtcttatatatcttacacattattataaaggtcttctt---atgtaaat |
106 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| |||||| |||| ||||||||||||||| |||||||| |
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| T |
43655400 |
attatactatcacacatccttattatcttagaccacaaatcaaacttgattgtcttatac--cttacatattaatataaaggtcttcttcttatgtaaat |
43655303 |
T |
|
| Q |
107 |
aaaaaattagcttcacaagagatattcaagcaagctgaagacatacctcatctccttcctaagctaagtaaaggctgcttgcctttccatggccactaaa |
206 |
Q |
| |
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||||| ||||||||| || |||||||||||||||||||||||||||||||||||||| || | ||||||||| || |||||||||||||||||||||| |
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| T |
43655302 |
aaaaatttagcttcataaaagatattcaagcaagctgaagacatacctcatctccttgctcaactaagtaaatattgattgcctttccatggccactaaa |
43655203 |
T |
|
| Q |
207 |
taatatggtaaatctttctttatcatagtatacaaacttcaaaccataaagaaatagttatgcagtgcattatcttctgaattaatatacttctatagtt |
306 |
Q |
| |
|
|| ||| ||||||||| |||| ||||||||||||||| |||||||||||||||||||| |||||||||||||| ||||||||||| | |
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| T |
43655202 |
tagtatagtaaatcttc----atcacagtatacaaacttcacaccataaagaaatagttatgtagtgcattatcttccaaattaatatac--------tc |
43655115 |
T |
|
| Q |
307 |
ctatgcaagagaactcattaagttcagccatcaaaatcattccaccatgtgatcctttacaactctttgaataggcattcgataagtgcatctaattttg |
406 |
Q |
| |
|
||||||||||||| ||||||||||||||| |||||||||||||||||||||||||| || || |||||| || |||||||||||||||||||||| |||| |
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|
| T |
43655114 |
ctatgcaagagaattcattaagttcagccgtcaaaatcattccaccatgtgatcctgtaaaattctttggatgggcattcgataagtgcatctaa-tttg |
43655016 |
T |
|
| Q |
407 |
atgcaaacccacttagaaaatgttaacagttgaattgttagaagaatgtactaacattcataataaaatccataacttttccaatatctatcaatttaat |
506 |
Q |
| |
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||||| | |||||| || |||| ||| |||||||||||||||||||||||| ||| ||||||||||||||||||||||| |||||||||||||||||||| |
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|
| T |
43655015 |
atgcatatccactttgacaatgctaaaagttgaattgttagaagaatgtaccaaccttcataataaaatccataactttaccaatatctatcaatttaat |
43654916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 504 - 534
Target Start/End: Complemental strand, 43654853 - 43654823
Alignment:
| Q |
504 |
aatatatttgaattcaagatgaatcaaaata |
534 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
43654853 |
aatatatttgaattcaagatgaatcaaaata |
43654823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 10 - 69
Target Start/End: Complemental strand, 8586476 - 8586417
Alignment:
| Q |
10 |
attatactatcacacatccttatgatcttagaccacaaaccaaacttgattgtcttatat |
69 |
Q |
| |
|
||||||||||||||||||| ||| ||||||||||||||| || |||||||| |||||||| |
|
|
| T |
8586476 |
attatactatcacacatccctataatcttagaccacaaatcacacttgattatcttatat |
8586417 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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